Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11c19
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 115 5e-27
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 110 1e-25
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 89 5e-19
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 81 1e-16
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 77 2e-15
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 64 2e-11
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 50 4e-07
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.56
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.3
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 26 5.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 6.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 9.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.1
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 115 bits (277), Expect = 5e-27
Identities = 60/141 (42%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Frame = +2
Query: 215 RVAAFFAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETH 394
+VAAF E IQG GV+ GYL++A +L K + L++ADEVQTG RTG E
Sbjct: 206 KVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLC-IEHS 264
Query: 395 GVKPDIVTMAKGIGNG-FPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIE 571
VKPD+V + K I G +P++AV++++EI N + +T+GGNP+ + V A LEV++
Sbjct: 265 NVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNPLGAAVSIAALEVVK 324
Query: 572 EEGLQQNSKVVGEYFIRQLMD 634
EE L + + V+GE F L++
Sbjct: 325 EEKLTERAAVLGEKFRTALIE 345
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 110 bits (265), Expect = 1e-25
Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Frame = +2
Query: 212 GRVAAFFAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFET 391
G +A E+I GG+++ P+GYLK ++ ++ G L + DE QTG GRTG F FE
Sbjct: 210 GSLACMIVETILSTGGIIELPQGYLKALKKKCEERGMLLIIDEAQTGIGRTGSMF-SFEH 268
Query: 392 HGVKPDIVTMAKGIGNGFPLAAVVTTKEI--AANHAKAAYFNTFGGNPMASTVGKAVLEV 565
HG+ PDI+T++K +G G LAAV+T++EI ++ T +P+ + +G VL+V
Sbjct: 269 HGIVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNGFVFYTTHASDPLPAAIGSTVLKV 328
Query: 566 IEEEGLQQNSKVVGEYFIRQLM 631
++ + L + +K+ GE L+
Sbjct: 329 VKRDNLVEKAKISGELLRSDLL 350
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 89.0 bits (211), Expect = 5e-19
Identities = 53/147 (36%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Frame = +2
Query: 185 ELLGNSVPAGRVAAFFAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRT 364
E L ++ +G +F E IQG GGV+ P GYL KA+EL K V DE+QTG GRT
Sbjct: 226 EALQVALSSGMYRSFIVEPIQGEGGVIVPPPGYLAKARELCTKYDTYLVLDEIQTGCGRT 285
Query: 365 GDHFWGFETHGVKPDIVTMAKGIGNG-FPLAAVVTTKEI---AANHAKAAYFN--TFGGN 526
G FW E + PD + AKG G P A + T+E+ A N + A+ + T+ N
Sbjct: 286 G-KFWACEYENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQEN 344
Query: 527 PMASTVGKAVLEVIEEEGLQQNSKVVG 607
+ G A ++ I + L + +G
Sbjct: 345 TLGLAAGVATIDYIVQNDLLSRCRKLG 371
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 81.4 bits (192), Expect = 1e-16
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = +2
Query: 215 RVAAFFAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFET- 391
+ AA E +QG GG+ +L ++ K G + DE+Q G GR+GD W
Sbjct: 223 KTAAVIVEPVQGEGGICPAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGD-LWAHSIV 281
Query: 392 -HGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVI 568
PDI+T+AK + NG P+ A + + +IAA + +TFGGNP+A VG + +
Sbjct: 282 KDVASPDIITVAKPLANGLPIGATIVSSKIAAEIHPGEHGSTFGGNPVACRVGTFCVNEL 341
Query: 569 EEEGLQQN 592
+ QN
Sbjct: 342 GSSKILQN 349
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 77.4 bits (182), Expect = 2e-15
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 11/169 (6%)
Frame = +2
Query: 155 STDKYVHQL-NELLGNSVPAG--RVAAFFAESIQGA--GGVVQFPKGYLKKAQELIKKNG 319
+T++YV +L EL + G +VAAF AE++ GA G P GY K +++ K G
Sbjct: 192 TTEEYVARLAKELEDEILRVGPEKVAAFVAETVSGACTGCATPVP-GYFKAMRKVCDKYG 250
Query: 320 GLYVADEVQTGFGRTGD-HFWGFETHGVKPDIVTMAKGIGNGF-PLAAVVTTKEI----A 481
++ DEV +G GRTG H W E GV PDI ++AK +G G+ P++ + I
Sbjct: 251 VIFYLDEVMSGIGRTGTMHAW--EQEGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFE 308
Query: 482 ANHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQL 628
A A F T+ +P+A + AV ++ + L + + +G+Y +L
Sbjct: 309 QKDAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKL 357
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 64.1 bits (149), Expect = 2e-11
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Frame = +2
Query: 218 VAAFFAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFWGFETHG 397
V A E IQ GG + K Q +KK+ ++ DEVQTG G TG W E
Sbjct: 263 VVACIIEPIQSEGGDNHASPDFFHKLQATLKKHDVKFIVDEVQTGVGSTGT-LWAHEQWN 321
Query: 398 V--KPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAAYFNTFGGNPMASTVGKAVLEVIE 571
+ PD+VT +K AA + ++A +FNT+ G+P + + +L+ I+
Sbjct: 322 LPYPPDMVTFSKKF-----QAAGIFYHDLALRPHAYQHFNTWMGDPFRAVQSRYILQEIQ 376
Query: 572 EEGLQQNSKVVGEY 613
++ L N K VG++
Sbjct: 377 DKDLLNNVKSVGDF 390
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/94 (31%), Positives = 49/94 (52%)
Frame = +2
Query: 176 QLNELLGNSVPAGRVAAFFAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVADEVQTGF 355
Q EL+ +S +AA E++QGAGG + K +++ Q +KN +++ DEV T
Sbjct: 193 QFKELVNSSQD---IAAVIVEAMQGAGGAIPADKEFMQTIQLECEKNDIVFILDEVMTSR 249
Query: 356 GRTGDHFWGFETHGVKPDIVTMAKGIGNGFPLAA 457
G + + +KPD+ T+ K +G G P A
Sbjct: 250 LSPGGL---QQIYCLKPDLTTLGKYLGGGLPFGA 280
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.56
Identities = 29/87 (33%), Positives = 37/87 (42%)
Frame = -3
Query: 441 PLPIPLAIVTMSGFTPCVSKPQK*SPVRPKPVCTSSATYKPPFFLINS*AFFRYPLGNCT 262
P+P P + T+S +P S P+ +PV P S T KPP +S N
Sbjct: 255 PIPPP-SNGTVS--SPPNSPPRPIAPVSMNPAINS--TSKPPLPPPSSRVSAAALAANKK 309
Query: 261 TPPAP*MDSAKNAATLPAGTELPNSSL 181
PP P S +N P G NSSL
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSNSSL 336
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/75 (30%), Positives = 30/75 (40%)
Frame = +2
Query: 113 SQAPGSCSCTGECISTDKYVHQLNELLGNSVPAGRVAAFFAESIQGAGGVVQFPKGYLKK 292
S PGSC + D++ QLN LL N V R++A G V L+K
Sbjct: 420 SNMPGSCLPGASSNTADEFTEQLN-LLKNEV--ARLSAICPSPNSGINASVLTNADNLEK 476
Query: 293 AQELIKKNGGLYVAD 337
L+ N V D
Sbjct: 477 ENLLLVNNNAFKVDD 491
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +2
Query: 440 GFPLAAV-VTTKEIAA---NHAKAAYFNTFGGNPMASTVGKAVLEVIEEE 577
GFP+ V T+ I + N A+ A + G P+ S++GKA+LE+ EE
Sbjct: 436 GFPVGFVNAVTRHIPSPRENAARKASQSYIG--PINSSIGKAILEMSREE 483
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 230 FAESIQGAGGVVQFPKGYLKKAQELIKKNGGLYVA 334
F + A VVQF YLKK K+N GLY +
Sbjct: 396 FVGRVANATDVVQF---YLKKKYTRSKRNDGLYTS 427
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 328 IQATILLDQLLSFLQVSLRELHDSTSTLNGFRKE 227
IQ + +D+LL +++ LREL + + L + K+
Sbjct: 183 IQKSEKIDELLQYIEERLRELEEEKNDLAVYHKK 216
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 227 FFAESIQGAG-GVVQFPKGYLKKAQELIKKNGGLYVADEVQTGFGRTGDHFW 379
+F+ + +G G+V P+ Y Q KN ADE+ GFG +H W
Sbjct: 1312 YFSSFLNSSGHGIVYNPEAY-SSCQYCPYKN-----ADELMVGFGYHYNHKW 1357
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -2
Query: 79 ERIRVDCVVETWRDGNG-HPVRL 14
+R R DCV TW+D N P +L
Sbjct: 184 KRRRADCVFFTWKDPNSLSPTKL 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,068
Number of Sequences: 5004
Number of extensions: 52378
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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