Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c19
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 403 LHAVRLEAPEMISSATEACL-YLISYIQATILLDQLLSFLQVSLRELHDSTSTLNGFRKE 227
           L  + ++AP  ISS TE+ L   I  +    +LD  +S  ++ + E  D+TS ++  +K+
Sbjct: 330 LQELHVDAPTWISSVTESVLKSKIGQVFLITILDSKVS-ARIEMNE-DDNTSLVSLDKKQ 387


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -3

Query: 150 HSPVHEQDPGACEIESLQPPKAPLKGSGWT 61
           +SP  + +    +++   PP  P++G  WT
Sbjct: 358 YSPSVQHEFVTFDLDEPLPPPPPIRGGEWT 387


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 310 LDQLLSFLQVSLRELHDSTSTLNGFRKECR 221
           LD  L  LQ  L E    TST       CR
Sbjct: 73  LDTFLRELQADLAEASQPTSTTTSVTPSCR 102


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 147 SASALTNMSTNLTS 188
           SAS +TN++TNLT+
Sbjct: 952 SASNVTNVTTNLTT 965


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,024
Number of Sequences: 438
Number of extensions: 3629
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)