Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c18
         (128 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   1.0  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    24   2.4  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    23   5.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    23   5.6  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    23   5.6  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    22   9.7  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    22   9.7  

>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 82  NSHINKWQLFNISLLNLHHLHDLTEC 5
           + H  +W  F+   LNLH L+++T C
Sbjct: 72  DGHTGQWS-FSCRRLNLHLLNEITTC 96


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 106 ELYSQYCFNSHINKWQLFNISLLNLHHLHDLTE 8
           +L+SQ C+  +   W+    S+++ H+L+   E
Sbjct: 702 QLHSQ-CYKGNYELWRYIPYSIIHFHYLYATPE 733


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = -2

Query: 118 QLI*ELYSQYCFNSHINKWQLFNI---SLLNLHHLH-DLTE 8
           Q++   +  Y F +H N+W++  I   +LL+L  ++ DL E
Sbjct: 660 QVLGYFFPVYAFGAHENQWRIATIFCDALLSLLEIYRDLDE 700


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 30  CKLSREILNSCHLLICE 80
           CKL  +I N C   ICE
Sbjct: 75  CKLCVDICNGCSTPICE 91


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 103 LYSQYCFNSHINKWQLFNISLLN 35
           +Y+QY F   I K + F + L+N
Sbjct: 424 IYTQYAFQWQIFKNKCFQLDLMN 446


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 73  INKWQLFNISLLNLHHLH 20
           +++W      LLNL H+H
Sbjct: 449 LSEWDFNRALLLNLQHMH 466


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 91  YCFNSHINKWQLFN 50
           Y F    NKWQL N
Sbjct: 280 YLFKESQNKWQLLN 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 419,875
Number of Sequences: 5004
Number of extensions: 4728
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 23
effective length of database: 2,247,386
effective search space used: 42700334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)