Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c18
         (128 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    29   0.60 
Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
           protein Y81G3A.3 protein.
          Length = 1696

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 91  YCFNSHINKWQLFNISLLNLHHLHDL 14
           +CFN+    W++F+  L  L ++HD+
Sbjct: 798 HCFNAPTEVWRIFSEVLCGLKYMHDM 823


>Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical
           protein F46B3.9 protein.
          Length = 354

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 30  CKLSREILNSCHLLICELKQYC 95
           C    + ++ CHLL+CE K  C
Sbjct: 109 CVPDEKPVDLCHLLVCESKSTC 130


>Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical
           protein C26C6.3 protein.
          Length = 617

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 12  VRSC--K*CKLSREILNSCHLLICELKQYC 95
           VRSC  K C+  R+   +C+L  C + ++C
Sbjct: 532 VRSCRSKKCEGRRQEFGTCNLKACPVDKHC 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,835
Number of Sequences: 27780
Number of extensions: 26681
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,740,198
effective HSP length: 23
effective length of database: 12,101,258
effective search space used: 229923902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)