Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c18
         (128 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   1.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    19   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    18   9.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    18   9.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           18   9.6  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 102 FIHNTVLIHISTN 64
           F  N +L+HISTN
Sbjct: 110 FSDNELLVHISTN 122


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 100 YSQYCFNSHINKWQLFNISLLNLHHLHDLTEC 5
           ++QY   S  N  +   I LL +  +  +++C
Sbjct: 395 FTQYIPESSSNLQEKTKIDLLEIPPIRKISDC 426


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 64  WQLFNISLLNL 32
           W L N+ +LNL
Sbjct: 499 WDLPNLQILNL 509


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 67  KWQLFNISLLNLHHLH 20
           +W   N +  +LH+LH
Sbjct: 511 QWPRLNPNEKSLHYLH 526


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 67  KWQLFNISLLNLHHLH 20
           +W   N +  +LH+LH
Sbjct: 511 QWPRLNPNEKSLHYLH 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,816
Number of Sequences: 438
Number of extensions: 346
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 23
effective length of database: 136,269
effective search space used:  2589111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)