Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c17
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    48   5e-06
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    29   3.9  
U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like pr...    29   3.9  
Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81111-6|CAB03269.1|  332|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    28   6.9  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    28   6.9  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    28   6.9  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    28   6.9  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    28   6.9  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
 Frame = +1

Query: 274 ELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIE----NK-- 435
           E ++  +  P    F  L  +  +K L++         L LF  GT KDY E    N   
Sbjct: 214 ECVRTAVVDPKSFSFDHLERLSAVKALKTSD-PLMFTALELFISGTLKDYKEFVAKNPKF 272

Query: 436 -SDYLELT-TVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADI 609
            +++L++  T+  KK++ LT+ +LA ++  I    L ++LDI     LE+ +I+AI  + 
Sbjct: 273 VTEHLKVDETILLKKIRLLTLMSLAEEKNEISLDELAKQLDILADETLEEFVIDAIQVNA 332

Query: 610 IHGKLDQECKRVEV 651
           I GK+++  + + V
Sbjct: 333 ISGKINEMARTLIV 346


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 376 HLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQ 480
           HLK +  F YG Y  Y++ K D L++   Q  + Q
Sbjct: 209 HLKRVKKFLYGQYPKYVDMKRDLLKIVKQQKPEAQ 243


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
 Frame = +1

Query: 307 VHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDY------LELTTVQC 468
           VH FGELL  P +K LE       +  L  F  G    +   + D+       +      
Sbjct: 219 VHNFGELLAHPILKSLEGTRERWIVDVLLAFNSGDLTRFFSLEGDWGGWDDLKKQKDFLT 278

Query: 469 KKLQHLTIATLATQEKCIPYSVLLEELDIK---NVRDLEDLIIEAIYADIIHGKLDQ 630
            K++ + +  LA        SV  +E+  K      ++E L+++A+  D+I G ++Q
Sbjct: 279 AKIRLMAVMELAVSRPTKARSVSFKEIATKCQIPFDEVEFLVMKALSKDLIRGDINQ 335


>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 478 VISCTGLWLILNSPICSQCS 419
           +I+CTG WL  N P+C + S
Sbjct: 627 LITCTGNWLSTNPPLCKKYS 646


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 478 VISCTGLWLILNSPICSQCS 419
           +I+CTG WL  N P+C + S
Sbjct: 657 LITCTGNWLSTNPPLCKKYS 676


>U41039-2|AAX88821.1|  141|Caenorhabditis elegans Saposin-like
           protein family protein22 protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 403 YGTYKDYIENKSDYLELTTVQCKKLQH 483
           YG   D+I+ K D++E+  + C+ L H
Sbjct: 62  YGVNYDFIQLKKDFIEMIRLDCEALFH 88


>Z93778-3|CAB07846.1|  446|Caenorhabditis elegans Hypothetical
           protein C31H5.6 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 451 LTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADI-IHGKLD 627
           L T  C K    T+  + T+E  IP+  + +E   + +  ++DL   +I++++ I  KL 
Sbjct: 298 LVTAPCFK----TLTPILTEENSIPWHWIPKETAFRLIGSVDDLCAPSIHSNLHIQKKLQ 353

Query: 628 QECKRVEVDV 657
           +    VE+++
Sbjct: 354 ETGHYVELEL 363


>Z81111-6|CAB03269.1|  332|Caenorhabditis elegans Hypothetical
           protein T01G5.7 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 322 ELLEMPNI-KEL--ESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKL 477
           +L+ M N+ +EL  ++  Y + L++ +   Y TY  + + KSD  EL   Q KKL
Sbjct: 123 QLIMMANLGEELGNDAKRYRSELESAHEELYQTYTIFDKEKSDLCELIEEQTKKL 177


>Z75713-4|CAB00050.1|  603|Caenorhabditis elegans Hypothetical
           protein T01G9.3 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 432 QIGLFRINHSPVQEITASDHCNT 500
           Q+ +  ++H+ +QEITA   CNT
Sbjct: 257 QLSVLDLSHNSIQEITACAFCNT 279


>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 YRIDLFPVYEIDIDVLKFKMNPMSMDRDEPSS 195
           Y I++ P Y+ D++ ++ KMN   + RD  SS
Sbjct: 289 YNINITPEYDEDMEKVRKKMNENFITRDNSSS 320


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 YRIDLFPVYEIDIDVLKFKMNPMSMDRDEPSS 195
           Y I++ P Y+ D++ ++ KMN   + RD  SS
Sbjct: 289 YNINITPEYDEDMEKVRKKMNENFITRDNSSS 320


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 YRIDLFPVYEIDIDVLKFKMNPMSMDRDEPSS 195
           Y I++ P Y+ D++ ++ KMN   + RD  SS
Sbjct: 429 YNINITPEYDEDMEKVRKKMNENFITRDNSSS 460


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 YRIDLFPVYEIDIDVLKFKMNPMSMDRDEPSS 195
           Y I++ P Y+ D++ ++ KMN   + RD  SS
Sbjct: 289 YNINITPEYDEDMEKVRKKMNENFITRDNSSS 320


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 100 YRIDLFPVYEIDIDVLKFKMNPMSMDRDEPSS 195
           Y I++ P Y+ D++ ++ KMN   + RD  SS
Sbjct: 289 YNINITPEYDEDMEKVRKKMNENFITRDNSSS 320


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/97 (26%), Positives = 41/97 (42%)
 Frame = +1

Query: 127 EIDIDVLKFKMNPMSMDRDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPG 306
           ++D D    ++N    D D    L+SF S+HPL ++ +      G    ELI   +E  G
Sbjct: 638 QVDADPFHIQLNQTLHDDD----LISFLSHHPLTKYAMSHTPDMGEDDIELIDTPVEL-G 692

Query: 307 VHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYK 417
           +     L+    I+ L S    +   T N+    T K
Sbjct: 693 LEATENLVIEEEIEALTSVDEVSTPSTENIQEVHTTK 729


>Z99169-2|CAB16307.1| 1334|Caenorhabditis elegans Hypothetical
           protein C26H9A.2 protein.
          Length = 1334

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 335 CQILKSWRVDLMQLI*KLLICLP 403
           C++ + WR  L+QL+ +LLI  P
Sbjct: 587 CEVNEEWRSSLLQLVKQLLIVAP 609


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +1

Query: 310 HVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQ--- 480
           H+   L  M  +K L SG Y TH K ++  A  + +D    K+  +++ +++C       
Sbjct: 156 HIMNTLTSM--VKALGSGDYVTH-KKIHSIAKNSLQDRTLCKTPNVKIASLECLTALVQF 212

Query: 481 HLTIATLATQEKCIPYSVLLE 543
           H  I T   +  C     +LE
Sbjct: 213 HTPIYTTELEASCTMCIKILE 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,790
Number of Sequences: 27780
Number of extensions: 300394
Number of successful extensions: 685
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)