Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11c14
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 33 0.22
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 33 0.22
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 31 0.89
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 31 1.2
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.5
01_01_0458 + 3396508-3396636,3396752-3396807,3397451-3397565,339... 30 2.0
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 2.7
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 3.6
02_05_0319 - 27872601-27874457 29 4.7
01_05_0612 - 23652121-23652400,23653031-23654427 29 4.7
06_03_0739 + 24004629-24005219 28 6.2
05_04_0069 - 17639386-17641380 28 6.2
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 28 6.2
10_08_0032 - 14288522-14290465 28 8.3
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 690 RGLWRRGPPESPWHWSR 640
RGLW G PE PW W R
Sbjct: 277 RGLWASGNPEKPWDWRR 293
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -3
Query: 690 RGLWRRGPPESPWHWSR 640
RGLW G PE PW W R
Sbjct: 339 RGLWASGNPEKPWDWRR 355
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 31.1 bits (67), Expect = 0.89
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 690 RGLWRRGPPESPWHWSRPPTSKTPEHN 610
+GLW PE PW W + + HN
Sbjct: 34 QGLWAYDNPEKPWEWRKNKRKASEHHN 60
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 622 TRAQHVSGDSTVNGSVTLDAGILIDGPDLDVTELLRIRPSERCSTPTSSPNNLVI 458
TRA H SG+ST+ G++ + D PD+D L+ + P+ SP + I
Sbjct: 132 TRALHFSGNSTIEGAINWLSEHQED-PDIDEPLLVPANTITEANKPSLSPEEMKI 185
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +1
Query: 25 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 147
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>01_01_0458 +
3396508-3396636,3396752-3396807,3397451-3397565,
3397671-3397787,3397908-3398095,3398198-3398257,
3398365-3398524,3398903-3398971,3399085-3399186
Length = 331
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 699 QRGR-GLWRRGPPESPWHWSRPPTSKT 622
Q GR GLW P+ PW W R + T
Sbjct: 304 QSGRKGLWAASRPQKPWEWRRDKRNGT 330
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 83 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 199
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 83 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 199
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>02_05_0319 - 27872601-27874457
Length = 618
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +3
Query: 516 RSNSVTSRSGPSIRMPASNVTDPLTVLSPLTCCALVFWTSVVATSARVTPVVLSSTNRVL 695
R NSVT+ S PS+ +P + + L SP +S ++SA +P + ++++R L
Sbjct: 202 RLNSVTAASSPSLPLPTAVNSTALLARSPTNSS-----SSTASSSASSSPPISAASSRQL 256
Query: 696 V 698
+
Sbjct: 257 L 257
>01_05_0612 - 23652121-23652400,23653031-23654427
Length = 558
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 278 GSTFANSGGVVHNVNRII--IHPNYNRRTADSD 370
G T A S ++R++ +HPN NR+T DSD
Sbjct: 64 GITVAFSAAAPPAISRLLFALHPNKNRQTTDSD 96
>06_03_0739 + 24004629-24005219
Length = 196
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 227 AAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIH 337
AAH PY + R+ + G +GG + RII H
Sbjct: 160 AAHTPYSECPSRFAVADGEGRVYAGGYAWSPRRIIRH 196
>05_04_0069 - 17639386-17641380
Length = 664
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 215 SILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNV---NRIIIHPNYNRRTADSDLCILR 385
S L AAH +GDA G W + S GV NV N ++ N + R D+ L ++R
Sbjct: 90 SALIAAHASHGDAEGAWGL---LERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVR 146
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 455 GDNQVVWAAGWGATSLGGSNSEQLRHVQV-WTINQNACVQRYRPINRAITANMLCSGV 625
GD + AAGW A S + E+ R +Q ++ +A +R I R A M+ G+
Sbjct: 7 GDREGKSAAGWTALSTTKTTLEEKRRLQANGSVGGDAGTSGFRRIVRLFFACMVAGGI 64
>10_08_0032 - 14288522-14290465
Length = 647
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 272 RVGSTFANSGGVVH-NVNRIIIHPNYNRRTADSDLCILRSNSNIAY 406
R+G A++ ++ +VN+++IHP R+ + + + +AY
Sbjct: 465 RIGELVASNFSIIGVDVNQVVIHPRLGRKGYEMIIAFMNPEGMLAY 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,879,061
Number of Sequences: 37544
Number of extensions: 532884
Number of successful extensions: 1637
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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