Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11c07
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    43   3e-04
01_06_1147 + 34892415-34893702,34894051-34894676                       28   8.4  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 29/115 (25%), Positives = 48/115 (41%)
 Frame = +2

Query: 176 YGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIRG 355
           YGF +G++  D      + I Q  +     + +  D  KAFD +EH+ +L  + H G   
Sbjct: 422 YGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPL 481

Query: 356 VSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFI 520
             +E ++         V + G   +      GV QG  L   LF++    L + I
Sbjct: 482 KWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRII 536


>01_06_1147 + 34892415-34893702,34894051-34894676
          Length = 637

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 344 HSGVIPSIMYYVQQNQKL*INRRIPQGHYAIPL 246
           H  V+P   YY  +++KL +   IP G  A+ L
Sbjct: 396 HQNVVPLRAYYYSKDEKLLVYDYIPSGSLAVVL 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,464
Number of Sequences: 37544
Number of extensions: 287324
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)