Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11c07
(708 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK094887-1|BAC04450.1| 272|Homo sapiens protein ( Homo sapiens ... 49 2e-05
AK127459-1|BAC86988.1| 238|Homo sapiens protein ( Homo sapiens ... 46 1e-04
AK127847-1|BAC87159.1| 129|Homo sapiens protein ( Homo sapiens ... 43 0.001
AK127765-1|BAC87120.1| 184|Homo sapiens protein ( Homo sapiens ... 41 0.005
AK126793-1|BAC86696.1| 188|Homo sapiens protein ( Homo sapiens ... 33 1.0
BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain conta... 30 7.1
AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein pr... 30 7.1
AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain conta... 30 7.1
AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain conta... 30 7.1
AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens ... 30 7.1
AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens ... 30 7.1
AF070542-1|AAC28634.1| 467|Homo sapiens unknown protein. 30 7.1
AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein. 30 7.1
>AK094887-1|BAC04450.1| 272|Homo sapiens protein ( Homo sapiens
cDNA FLJ37568 fis, clone BRCOC2002323. ).
Length = 272
Score = 48.8 bits (111), Expect = 2e-05
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +2
Query: 281 DLSKAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQ 460
D KAF+ ++H +L+ L+ GI G +++I++ I + + G++ G LL G Q
Sbjct: 6 DAEKAFNKIKHPFMLKTLNKLGIDGTHIKIIRAIYDKPIANIILNGQKLEGFLLTTGTRQ 65
Query: 461 GSILG*FLFLVSINDLPKFIETRHEV 538
G L LF + + LP I E+
Sbjct: 66 GCPLSPLLFNIVLEVLPTAIRQEKEI 91
>AK127459-1|BAC86988.1| 238|Homo sapiens protein ( Homo sapiens
cDNA FLJ45551 fis, clone BRTHA2037247. ).
Length = 238
Score = 46.4 bits (105), Expect = 1e-04
Identities = 29/117 (24%), Positives = 58/117 (49%)
Frame = +2
Query: 188 RGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIRGVSLE 367
+G I S+++ +I + +++H + + D KAF+ ++H +L+ L+ GI G L+
Sbjct: 2 QGWFNICRSINVTHHINRTKDKNHMIISI--DAEKAFNKIQHRFMLKTLNKLGIEGPCLK 59
Query: 368 LIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETRHEV 538
+I++ R + + G++ L G QG L LF + + L + I E+
Sbjct: 60 IIRAICDKRTANIILNGQQLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQVKEI 116
>AK127847-1|BAC87159.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ45950 fis, clone PLACE7008136. ).
Length = 129
Score = 42.7 bits (96), Expect = 0.001
Identities = 24/90 (26%), Positives = 41/90 (45%)
Frame = +2
Query: 260 NALGVFCDLSKAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVL 439
N + + D K FD ++H +++ L GI G L++IK+ + + G+
Sbjct: 33 NHMIISIDARKGFDKIQHPFMMKTLSKIGIEGTYLKVIKAIYHKSTANIILNGEMLKAFP 92
Query: 440 LNMGVPQGSILG*FLFLVSINDLPKFIETR 529
L G QG +L LF + + L + I R
Sbjct: 93 LRTGTRQGCLLSPLLFSIVLEVLARAIRER 122
>AK127765-1|BAC87120.1| 184|Homo sapiens protein ( Homo sapiens
cDNA FLJ45866 fis, clone OCBBF3001616. ).
Length = 184
Score = 40.7 bits (91), Expect = 0.005
Identities = 26/117 (22%), Positives = 56/117 (47%)
Frame = +2
Query: 188 RGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIRGVSLE 367
+G I S+++I +I + ++ + + D KAF+ ++H +++ + I+G L
Sbjct: 17 QGWLIICKSINVIHHINRIKNKNQTIISI--DAEKAFEEIQHRFMIKTVSKISIQGTYLN 74
Query: 368 LIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETRHEV 538
+IK+ + + G++ L +G QG L LF +++ L + I E+
Sbjct: 75 VIKAIYDKPTANMILNGEKLKAFPLRIGTRQGCPLSPLLFNIALEVLTRAIRQEKEI 131
>AK126793-1|BAC86696.1| 188|Homo sapiens protein ( Homo sapiens
cDNA FLJ44843 fis, clone BRACE3050270. ).
Length = 188
Score = 33.1 bits (72), Expect = 1.0
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = +2
Query: 281 DLSKAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQ 460
D KAFD ++H+ +L+ L GI G L+++++ + + G + L G Q
Sbjct: 11 DAEKAFDEIQHHFMLKILDKLGIDGTYLKIVRAIYDKPTANIILNGHKLEVFPLKTGTRQ 70
Query: 461 GSILG*FLFLVSINDLPKFIETRHEV 538
L LF + L + I E+
Sbjct: 71 ECPLLPLLFNTVLEVLARAITQEKEI 96
>BC032446-1|AAH32446.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 143 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 199
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 200 FTIKDRNGKEVATDVRLLPQGTVI 223
>AY049788-1|AAL15445.1| 708|Homo sapiens NRAS-related protein
protein.
Length = 708
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 143 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 199
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 200 FTIKDRNGKEVATDVRLLPQGTVI 223
>AL096773-5|CAI18825.1| 798|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 798
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 174 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 230
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 231 FTIKDRNGKEVATDVRLLPQGTVI 254
>AL096773-4|CAI18826.1| 767|Homo sapiens cold shock domain
containing E1, RNA-binding protein.
Length = 767
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 143 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 199
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 200 FTIKDRNGKEVATDVRLLPQGTVI 223
>AK022528-1|BAB14080.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12466 fis, clone NT2RM1000826, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 143 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 199
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 200 FTIKDRNGKEVATDVRLLPQGTVI 223
>AK022516-1|BAB14073.1| 767|Homo sapiens protein ( Homo sapiens
cDNA FLJ12454 fis, clone NT2RM1000555, highly similar to
UNR PROTEIN. ).
Length = 767
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 143 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 199
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 200 FTIKDRNGKEVATDVRLLPQGTVI 223
>AF070542-1|AAC28634.1| 467|Homo sapiens unknown protein.
Length = 467
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 143 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 199
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 200 FTIKDRNGKEVATDVRLLPQGTVI 223
>AB020692-1|BAA74908.2| 826|Homo sapiens KIAA0885 protein protein.
Length = 826
Score = 30.3 bits (65), Expect = 7.1
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLREL-HHYGIRGVSLELIKSYLFGRIQK 403
+NI+ ++ GV C + +AF F+E +++E+ HY LE ++ G +
Sbjct: 202 RNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQP---GDDVE 258
Query: 404 VDVKGKRSSGVLLNMG-VPQGSIL 472
+K + V ++ +PQG+++
Sbjct: 259 FTIKDRNGKEVATDVRLLPQGTVI 282
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,119,088
Number of Sequences: 237096
Number of extensions: 1724759
Number of successful extensions: 2158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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