Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11c07
(708 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 85 1e-16
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 85 1e-16
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 72 9e-13
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 71 1e-12
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 69 8e-12
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 64 1e-10
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 63 3e-10
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 63 3e-10
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 63 3e-10
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 63 3e-10
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 63 3e-10
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 63 3e-10
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 62 9e-10
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 60 3e-09
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 60 4e-09
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 60 4e-09
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 60 4e-09
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 60 4e-09
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 60 4e-09
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 59 5e-09
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 58 2e-08
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 58 2e-08
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 55 1e-07
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 55 1e-07
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 45 9e-05
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 32 0.66
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 30 3.5
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 84.6 bits (200), Expect = 1e-16
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 24/206 (11%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSGSTFD-PSNFRPIS---------------- 148
++ I N C+ G F K +KI+P+ K G D P ++RPIS
Sbjct: 499 HIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLR 558
Query: 149 -VQFYSIKK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFV 307
V+F I QYGF G +TI ++ L +N ++ +S ++G V D+ AFD V
Sbjct: 559 LVKFLDIHNTLPTVQYGFRNGLNTILPTLKL-RNYIKESIQSKQSVGLVTLDIEAAFDTV 617
Query: 308 EHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLF 487
H+ LL +L G +++++++L R V++ +S+ +LN GVPQGS+LG LF
Sbjct: 618 WHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLF 677
Query: 488 LVSINDLPKFIETRHEVVLFTDDTSL 565
+ +D+P+ T + LF DD ++
Sbjct: 678 NIFTHDIPQ--ATNCVLSLFADDAAV 701
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 84.6 bits (200), Expect = 1e-16
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 24/206 (11%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSGSTFD-PSNFRPIS---------------- 148
++ I N C+ G F K +KI+P+ K G D P ++RPIS
Sbjct: 447 HIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKLR 506
Query: 149 -VQFYSIKK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFV 307
V+F I QYGF G +TI ++ L +N ++ +S ++G V D+ AFD V
Sbjct: 507 LVKFLDIHNTLPTVQYGFRNGLNTILPTLKL-RNYIKESIQSKQSVGLVTLDIEAAFDTV 565
Query: 308 EHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLF 487
H+ LL +L G +++++++L R V++ +S+ +LN GVPQGS+LG LF
Sbjct: 566 WHDGLLHKLKMIGTPIYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLF 625
Query: 488 LVSINDLPKFIETRHEVVLFTDDTSL 565
+ +D+P+ T + LF DD ++
Sbjct: 626 NIFTHDIPQ--ATNCVLSLFADDAAV 649
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 71.7 bits (168), Expect = 9e-13
Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSGST-FDPSNFRPISV--------------Q 154
+L IFN +D G F K + II + K+G T D ++RPIS+ +
Sbjct: 278 FLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIMERLILNR 337
Query: 155 FYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ K Q+GF T + ++ L+A E A+G F D+ +AFD V
Sbjct: 338 LLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVW 397
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFL 490
H LL + + L ++KS+L R V V G +SS + GVPQGS+LG L+
Sbjct: 398 HPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYS 456
Query: 491 VSINDLP---KFIETRHEVVL---FTDDTSLLFKIK 580
V +D+P E E VL + DDT++L K K
Sbjct: 457 VFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSK 492
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 71.3 bits (167), Expect = 1e-12
Identities = 69/216 (31%), Positives = 101/216 (46%), Gaps = 29/216 (13%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSGST-FDPSNFRPISV--------------Q 154
+LA IFN +D G F K + II + K+G T D ++RP S+ +
Sbjct: 476 FLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNR 535
Query: 155 FYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ K Q+GF T + ++ L+A E A+G F D+ +AFD V
Sbjct: 536 LLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVW 595
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFL 490
H LL + + L ++KS+L R V V G +SS + GVPQGS+LG L+
Sbjct: 596 HPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYS 654
Query: 491 VSINDLP---KFIETRHEVVL---FTDDTSLLFKIK 580
V +D+P E E VL + DDT++L K K
Sbjct: 655 VFASDMPTHTPVTEVDEEDVLIATYADDTAVLTKSK 690
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 68.5 bits (160), Expect = 8e-12
Identities = 42/113 (37%), Positives = 62/113 (54%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIR 352
Q+GF +G ST++ L K+ILQA ++ VF D+ +AFD V H+ L+ ++
Sbjct: 549 QFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKL-FP 607
Query: 353 GVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLP 511
++KSYL R V V+ S ++ GVPQGS+LG L+ V DLP
Sbjct: 608 APYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLP 660
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding protein,
3' end. ).
Length = 858
Score = 64.5 bits (150), Expect = 1e-10
Identities = 61/214 (28%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSGSTFD-PSNFRPISV--------------- 151
Y+ +FN G F K KII + K G S++RPIS+
Sbjct: 472 YITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISLLSCISKLFEKCLLIR 531
Query: 152 -----QFYSI--KKQYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+++I Q+GF TI+ + I A E VF D+S+AFD V
Sbjct: 532 LNQHQTYHNIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVW 591
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFL 490
+ L+ ++ + + +L+KSYL+ R V S+ + GVPQGS+LG L+L
Sbjct: 592 LDGLMFKIK-ISLPESTHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYL 650
Query: 491 VSINDLPKFIETRHEVVLFTDDTSLLFKIKRQLE 592
+ D+P +R V F DDT++L + + ++
Sbjct: 651 IYTADIP--TNSRLTVSTFADDTAILSRSRSPIQ 682
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 63.3 bits (147), Expect = 3e-10
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + D K +++ + K G S DP ++RPIS+ +
Sbjct: 403 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKR 462
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + T + + IL+A E VF D+S+AFD V
Sbjct: 463 LFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 522
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 523 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILY 581
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 582 SIFSSDMP 589
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.3 bits (147), Expect = 3e-10
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + D K +++ + K G S DP ++RPIS+ +
Sbjct: 519 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKR 578
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + T + + IL+A E VF D+S+AFD V
Sbjct: 579 LFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 638
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 639 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILY 697
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 698 SIFSSDMP 705
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.3 bits (147), Expect = 3e-10
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + D K +++ + K G S DP ++RPIS+ +
Sbjct: 519 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKR 578
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + T + + IL+A E VF D+S+AFD V
Sbjct: 579 LFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 638
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 639 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILY 697
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 698 SIFSSDMP 705
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 63.3 bits (147), Expect = 3e-10
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + D K +++ + K G S DP ++RPIS+ +
Sbjct: 481 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKR 540
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + T + + IL+A E VF D+S+AFD V
Sbjct: 541 LFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 600
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 601 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILY 659
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 660 SIFSSDMP 667
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 63.3 bits (147), Expect = 3e-10
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + D K +++ + K G S DP ++RPIS+ +
Sbjct: 519 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKR 578
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + T + + IL+A E VF D+S+AFD V
Sbjct: 579 LFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 638
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 639 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRAGQIGAGVPQGSNLGPILY 697
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 698 SIFSSDMP 705
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 63.3 bits (147), Expect = 3e-10
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIR 352
Q F ST+DA + + A ++ + D +AFD V + +L L +GI
Sbjct: 548 QVAFKSNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIG 607
Query: 353 GVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETRH 532
LIK+++ R +V + S+ +L+ G+PQGS L LF+++I D+ + TRH
Sbjct: 608 PRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIV-TRH 666
Query: 533 E---VVLFTDDTSLLFKIK 580
+ + L+ DD + KIK
Sbjct: 667 KDIYISLYADDAIIFTKIK 685
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 61.7 bits (143), Expect = 9e-10
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Frame = +2
Query: 170 KQYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGI 349
KQ+GF +G+ST D L + L + H +L V D S+AFD V ++++++L +
Sbjct: 542 KQFGFKKGKSTSDCL--LYVDYLITKSKMHTSL-VTLDFSRAFDRVGVHSIIQQLQEWKT 598
Query: 350 RGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETR 529
++ IK+++ R V V SS + L G+PQGS + LFL++ N L I
Sbjct: 599 GPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKLSNIISLH 658
Query: 530 HEVVL--FTDDTSLLFKIKR 583
E+ + DD L+ +
Sbjct: 659 KEIKFNAYADDFFLIINFNK 678
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 60.1 bits (139), Expect = 3e-09
Identities = 41/136 (30%), Positives = 65/136 (47%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIR 352
Q+GF TI+ + I A E +F D+++AFD V + LL ++ +
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKLLPQ 603
Query: 353 GVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETRH 532
+L+KSYL+ R+ + S + GVPQGS+LG L+ + D P I+
Sbjct: 604 NTH-KLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP--IDYNL 660
Query: 533 EVVLFTDDTSLLFKIK 580
F DDT++L + K
Sbjct: 661 TTSTFADDTAILSRSK 676
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 59.7 bits (138), Expect = 4e-09
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + + K +++ + K G S+ +P ++RPIS+ +
Sbjct: 531 YLILIYNSILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKR 590
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + T + + IL+A E VF D+S+AFD V
Sbjct: 591 LFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 650
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 651 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLY 709
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 710 SIFSSDMP 717
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 59.7 bits (138), Expect = 4e-09
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N+ + G F + K + I + K G S F +++RPIS+ +
Sbjct: 75 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKR 134
Query: 155 FYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
Y I Q+GF + + + IL+A +E F D+++AFD V
Sbjct: 135 LYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVW 194
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGV-LLNMGVPQGSILG*FLF 487
H+ LL +L I +L+++YL R V + G+ +S + + GVPQGSILG L+
Sbjct: 195 HDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLY 253
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 254 SIYSSDMP 261
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 4e-09
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N+ + G F + K + I + K G S F +++RPIS+ +
Sbjct: 522 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILPKR 581
Query: 155 FYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
Y I Q+GF + + + IL+A +E F D+++AFD V
Sbjct: 582 LYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVW 641
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGV-LLNMGVPQGSILG*FLF 487
H+ LL +L I +L+++YL R V + G+ +S + + GVPQGSILG L+
Sbjct: 642 HDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLY 700
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 701 SIYSSDMP 708
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 4e-09
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N+ + G F + K + I + K G S F +++RPIS+ +
Sbjct: 522 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKR 581
Query: 155 FYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
Y I Q+GF + + + IL+A +E F D+++AFD V
Sbjct: 582 LYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVW 641
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGV-LLNMGVPQGSILG*FLF 487
H+ LL +L I +L+++YL R V + G+ +S + + GVPQGSILG L+
Sbjct: 642 HDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLY 700
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 701 SIYSSDMP 708
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 59.7 bits (138), Expect = 4e-09
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N+ + G F + K + I + K G S F +++RPIS+ +
Sbjct: 522 YLILIYNNILRTGHFPNKWKHASISMIPKPGKSPFALNSYRPISLLSGLSKLLERILLKR 581
Query: 155 FYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
Y I Q+GF + + + IL+A +E F D+++AFD V
Sbjct: 582 LYDIDSFAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVW 641
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGV-LLNMGVPQGSILG*FLF 487
H+ LL +L I +L+++YL R V + G+ +S + + GVPQGSILG L+
Sbjct: 642 HDGLLYKLSRL-IPRYLFDLLENYLSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLY 700
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 701 SIYSSDMP 708
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 59.3 bits (137), Expect = 5e-09
Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIR 352
Q+GF G T++ +++ IL A + +F D+ +AFD V H L ++ +
Sbjct: 548 QFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWHIGLQLKIKQT-LP 606
Query: 353 GVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPK---FIE 523
L+KSYL GR V S+ + GVPQGS+LG L+ + +D+P+ +
Sbjct: 607 APYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLY 666
Query: 524 TRHEVVLFTDDTSLLFKIKRQLEDYDDVND 613
+ + F DD + ++ + + + D + D
Sbjct: 667 GKSMLATFADDVCVTYRSRCEHDAADGIQD 696
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 57.6 bits (133), Expect = 2e-08
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 24/188 (12%)
Frame = +2
Query: 20 YLATIFNDCIDCGVFLDLMKCSKIIPLFKSG-STFDPSNFRPISV--------------Q 154
YL I+N + G + + K +++ + K G S +P ++RPIS+ +
Sbjct: 519 YLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKR 578
Query: 155 FYSI---KK-----QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVE 310
+ + KK Q+GF + + + + IL+A E VF D+S+AFD V
Sbjct: 579 LFKVDLFKKAIPLHQFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVW 638
Query: 311 HNTLLRELHHYGIRGVSLELIKSYLFGRIQKV-DVKGKRSSGVLLNMGVPQGSILG*FLF 487
H LL +L + + +++SYL R +V D G+ S + GVPQGS LG L+
Sbjct: 639 HEGLLLKLAKILPYNLYI-ILESYLTNRTFEVKDQAGETSRTGQIGAGVPQGSNLGPLLY 697
Query: 488 LVSINDLP 511
+ +D+P
Sbjct: 698 SIFSSDMP 705
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 57.6 bits (133), Expect = 2e-08
Identities = 40/136 (29%), Positives = 64/136 (47%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIR 352
Q+GF TI+ + I A E +F D+++AFD V + LL ++ +
Sbjct: 544 QFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQAFDRVWLDGLLFKIIKLLPQ 603
Query: 353 GVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETRH 532
+L+KSYL+ + + S + GVPQGS+LG L+ + D P I+
Sbjct: 604 NTH-KLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFP--IDYNL 660
Query: 533 EVVLFTDDTSLLFKIK 580
F DDT++L + K
Sbjct: 661 TTSTFADDTAILSRSK 676
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 54.8 bits (126), Expect = 1e-07
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 21/207 (10%)
Frame = +2
Query: 11 IAPYLATIFNDCIDCGVFLDLMKCSKIIPLFKSGST--FDPSNFRPI-----------SV 151
I +LA++F+ CI G F KC +++ L K +PS++R I ++
Sbjct: 469 IPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAI 528
Query: 152 QFYSIKK--------QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFV 307
+++ Q+GF +GR DA +K+ + A + LG F D AFD V
Sbjct: 529 MVNRVREVLPEGCRWQFGFRQGRCVEDAWRH-VKSSVGA-SAAQYVLGTFVDFKGAFDNV 586
Query: 308 EHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLF 487
E + L L G R + L +S+ GR + V + V + G PQGSI G F++
Sbjct: 587 EWSAALSRLADLGCR--EMGLWQSFFSGR-RAVIRSSSGTVEVPVTRGCPQGSISGPFIW 643
Query: 488 LVSINDLPKFIETRHEVVLFTDDTSLL 568
+ ++ L + ++ ++ + DD LL
Sbjct: 644 DILMDVLLQRLQPYCQLSAYADDLLLL 670
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIR 352
Q+ F I+ + I A E +F D+++AFD V + L+ ++ +
Sbjct: 85 QFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRVWLDGLMFKIIQLLPQ 144
Query: 353 GVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFIETRH 532
+ +L+KSYL R+ V SS + GVPQGS+LG L+ + D+P T +
Sbjct: 145 NIH-KLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIP----TNY 199
Query: 533 EVVLFT--DDTSLL 568
++ +FT DDT+++
Sbjct: 200 QLTIFTFADDTAII 213
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 45.2 bits (102), Expect = 9e-05
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 10/164 (6%)
Frame = +2
Query: 170 KQYGFTRGRSTIDASVDLIKNILQA*EESHNALG---VFC-----DLSKAFDFVEHNTLL 325
+QYGF +G+ST+DA + + + + + + LG +C D+ AF+ +L
Sbjct: 513 QQYGFRKGKSTLDA-LKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIIL 571
Query: 326 RELHHYGIRGVSLELIKSYLFGRI-QKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSIN 502
+ + G+ +I +Y R+ V G RS V + GVPQGS+LG L+ + +
Sbjct: 572 GAMRNLGVPDYIRGVIGNYFRDRVLWYVTEDGPRSHQV--SAGVPQGSVLGPILWNIMYD 629
Query: 503 DLPKFIETRH-EVVLFTDDTSLLFKIKRQLEDYDDVNDAISRVV 631
+ + R E+ F DD ++ K E D N AI+ +
Sbjct: 630 GILSISKPRGVELHCFADDVAITAVAKTIPELQDISNVAITAAI 673
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 32.3 bits (70), Expect = 0.66
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 449 GVPQGSILG*FLFLVSINDLPKF-IETRHEVVLFTDDTSLLFKIKRQLEDYDDVNDAISR 625
GVPQGS+LG L+ + + + + R E+V F DD +LL K + + N I
Sbjct: 50 GVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALLVVDKYPGKAEEMCNRNIRA 109
Query: 626 VVHLFS 643
+ H S
Sbjct: 110 IEHWLS 115
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 29.9 bits (64), Expect = 3.5
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +2
Query: 281 DLSKAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQ 460
D+SKAFD + H ++ L YG ++ +++ G ++ G S + GV Q
Sbjct: 482 DVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQ 541
Query: 461 GSILG*FLF 487
G L LF
Sbjct: 542 GDPLSPILF 550
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,074,483
Number of Sequences: 53049
Number of extensions: 523043
Number of successful extensions: 1263
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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