Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11c07
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 55 6e-08
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 54 1e-07
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 44 1e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 44 1e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 44 1e-04
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 43 2e-04
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 36 0.021
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 33 0.15
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 33 0.26
U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF025451-2|AAK68202.1| 612|Caenorhabditis elegans Hypothetical ... 29 3.3
AF025451-1|AAB71201.1| 610|Caenorhabditis elegans Hypothetical ... 29 3.3
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 29 4.3
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 29 4.3
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical pr... 27 9.9
U00043-7|AAC77511.1| 137|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 27 9.9
AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuo... 27 9.9
AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuo... 27 9.9
AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuo... 27 9.9
AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuo... 27 9.9
AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuro... 27 9.9
AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuo... 27 9.9
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 27 9.9
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 27 9.9
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 27 9.9
AF025451-13|AAB71198.2| 142|Caenorhabditis elegans Hypothetical... 27 9.9
AC084159-9|AAK39358.1| 569|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 290 KAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVL-LNMGVPQGS 466
KAFD V H+ LL++LH +GI + +L R V V + ++ GVP+GS
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61
Query: 467 ILG*FLFLVSINDLPKFIETRHEVVLFTDD 556
+ G FLFL+ IN L + F DD
Sbjct: 62 VSGPFLFLIFINSLLLSVPPSISCSAFADD 91
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 54.0 bits (124), Expect = 1e-07
Identities = 35/120 (29%), Positives = 57/120 (47%)
Frame = +2
Query: 272 VFCDLSKAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMG 451
++ D SKAFD + H+ LL +L L + +L R +V + SS G
Sbjct: 17 IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76
Query: 452 VPQGSILG*FLFLVSINDLPKFIETRHEVVLFTDDTSLLFKIKRQLEDYDDVNDAISRVV 631
VPQG++L LF + +ND+ + + F DDT L+ + E +++ A+ VV
Sbjct: 77 VPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK-LYASTPKTESENNLQSALDAVV 135
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 170 KQYGFTRGRSTIDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFVEHNTLLRELHHYG 346
+Q GF R STID + ++ +L+ E L VF D KAFD VEH + + L G
Sbjct: 484 EQAGFRRSFSTID-HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQG 542
Query: 347 IRGVSLELIK 376
G ++L+K
Sbjct: 543 ADGAYIDLLK 552
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 170 KQYGFTRGRSTIDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFVEHNTLLRELHHYG 346
+Q GF R STID + ++ +L+ E L VF D KAFD VEH + + L G
Sbjct: 655 EQAGFRRSFSTID-HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQG 713
Query: 347 IRGVSLELIK 376
G ++L+K
Sbjct: 714 ADGAYIDLLK 723
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +2
Query: 170 KQYGFTRGRSTIDASVDLIKNILQA*EESHNALG-VFCDLSKAFDFVEHNTLLRELHHYG 346
+Q GF R STID + ++ +L+ E L VF D KAFD VEH + + L G
Sbjct: 394 EQAGFRRSFSTID-HIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQG 452
Query: 347 IRGVSLELIK 376
G ++L+K
Sbjct: 453 ADGAYIDLLK 462
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 42.7 bits (96), Expect = 2e-04
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Frame = +2
Query: 173 QYGFTRGRSTIDASVDLIKNI---LQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHH- 340
Q+GF ST A + + +I L A+ DL AFD V L +L
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEA 495
Query: 341 YGIRGVSLELIKSYLFGRIQKVDVKGKRSSGVLLNMGVPQGSILG*FLFLVSINDLPKFI 520
GI + +YL R+ + S L GVPQGS++ LF + D+P
Sbjct: 496 QGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQ 555
Query: 521 ETRHEVVLFTDDTSLLFKIKR 583
+T ++ + DD S++ + K+
Sbjct: 556 DTM--LISYADDMSIIARDKK 574
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +2
Query: 329 ELHHYGIRGVSLELIKSYLFGRIQKVDV-KGKRSSGVLLNMGVPQGSILG*FLFLVSIND 505
+L +G+ ++ K +L R V + K + ++ GVPQGS+ G LF++ IN+
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINN 898
Query: 506 LPKFIETRHEVVLFTDDTSL 565
L + + F DD +
Sbjct: 899 LLIDLAPTINISCFADDVKI 918
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 33.5 bits (73), Expect = 0.15
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 ESHNALG-VFCDLSKAFDFVEHNTLLRELHHYGIRGVSLELIKSYLFGRIQKVDVKGK-R 424
E+H + + LS AFD V H L+ +L+ + + + + + V V
Sbjct: 882 EAHKRVDLIHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVNDHLE 941
Query: 425 SSGVLLNMGVPQGSILG*FLFLVSINDL 508
S +G P+GS F+FLV IN L
Sbjct: 942 SEKHNCQIGAPRGSESRQFMFLVFINSL 969
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 227 KNILQA*EESHNALGVFCDLSKAFDFVEHNTLLRELHHYGIRGVSLELIK 376
K+ L++ + + VF D KAFD VEH + + L G ++L+K
Sbjct: 25 KDFLKSAGNTRSLTLVFIDFKKAFDSVEHQAIWKSLDEQGADEAYIDLLK 74
>U23510-3|AAC46782.1| 340|Caenorhabditis elegans Hypothetical
protein R12C12.3 protein.
Length = 340
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 29 TIFNDCIDCGVFLDLMKCSKIIPLFKSGS 115
TIF+D I C LD +KCS +P+ SG+
Sbjct: 299 TIFHDIIRCRQRLDDVKCSTYLPVNSSGA 327
>AF025451-2|AAK68202.1| 612|Caenorhabditis elegans Hypothetical
protein C24H12.5b protein.
Length = 612
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1
Query: 153 CTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
CTE LKLE VLP K ++ FIRS N
Sbjct: 537 CTEYELKLENGPVLPHCAK--MMTQFIRSTN 565
>AF025451-1|AAB71201.1| 610|Caenorhabditis elegans Hypothetical
protein C24H12.5a protein.
Length = 610
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1
Query: 153 CTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
CTE LKLE VLP K ++ FIRS N
Sbjct: 535 CTEYELKLENGPVLPHCAK--MMTQFIRSTN 563
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 521 ETRHEVVLFTDDTSLLFKIKRQLEDY 598
ETR EV++ TDD+ L KI R+L++Y
Sbjct: 967 ETRQEVIVQTDDSYL--KIARRLDEY 990
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 521 ETRHEVVLFTDDTSLLFKIKRQLEDY 598
ETR EV++ TDD+ L KI R+L++Y
Sbjct: 967 ETRQEVIVQTDDSYL--KIARRLDEY 990
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 438 YLIWVFLRVPYW-VNSYFLCLSMIYQSLL 521
YL+WV W + + F C+SM+Y L+
Sbjct: 93 YLLWVDFDFKIWFLQTMFACISMVYTILV 121
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 438 YLIWVFLRVPYW-VNSYFLCLSMIYQSLL 521
YL+WV W + + F C+SM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 438 YLIWVFLRVPYW-VNSYFLCLSMIYQSLL 521
YL+WV W + + F C+SM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>Z11115-9|CAD30453.1| 889|Caenorhabditis elegans Hypothetical
protein ZK637.8f protein.
Length = 889
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 612 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 654
>Z11115-8|CAD30452.1| 888|Caenorhabditis elegans Hypothetical
protein ZK637.8e protein.
Length = 888
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 617 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 659
>Z11115-7|CAD30451.1| 899|Caenorhabditis elegans Hypothetical
protein ZK637.8d protein.
Length = 899
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 628 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 670
>Z11115-6|CAD30450.1| 894|Caenorhabditis elegans Hypothetical
protein ZK637.8c protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 617 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 659
>Z11115-5|CAA77453.2| 883|Caenorhabditis elegans Hypothetical
protein ZK637.8b protein.
Length = 883
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 612 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 654
>Z11115-4|CAA77448.2| 905|Caenorhabditis elegans Hypothetical
protein ZK637.8a protein.
Length = 905
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 628 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 670
>U00043-7|AAC77511.1| 137|Caenorhabditis elegans Hypothetical
protein T26A5.8 protein.
Length = 137
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 534 RSYYSLTIHPYCLKLNDNWKIMTM*MMLSR 623
R + +IH +C ND WK+++ L+R
Sbjct: 79 RELENTSIHNHCKSANDKWKVISQQKALAR 108
>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 554 DTSLLFKIKRQLEDYDDVNDAIS 622
DT L+ ++K+ E YDD+ DA++
Sbjct: 1110 DTGLIEELKKLKEQYDDIPDALN 1132
>AF320904-1|AAG41437.1| 889|Caenorhabditis elegans UNC-32F vacuolar
proton pump 101kDa subunit variant protein.
Length = 889
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 612 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 654
>AF320903-1|AAG41436.1| 888|Caenorhabditis elegans UNC-32E vacuolar
proton pump 101kDa subunit variant protein.
Length = 888
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 617 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 659
>AF320902-1|AAG41435.1| 899|Caenorhabditis elegans UNC-32D vacuolar
proton pump 103kDa subunit variant protein.
Length = 899
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 628 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 670
>AF320901-1|AAG41434.1| 894|Caenorhabditis elegans UNC-32C vacuolar
proton pump 102kDa subunit variant protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 617 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 659
>AF320900-1|AAG41433.1| 883|Caenorhabditis elegans UNC-32B neuronal
vacuolar protonpump 100 kDa subunit variant protein.
Length = 883
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 612 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 654
>AF320899-1|AAG41432.1| 905|Caenorhabditis elegans UNC-32A vacuolar
proton pump 103kDa subunit variant protein.
Length = 905
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 189 LVNPYCFFIE*NCTEMGLKLEGSKVLPDLNKGIILLHFIRSRN 61
+++ + FF T +G K GS P L G+I + ++SRN
Sbjct: 628 ILSKWLFFGAVGGTVLGYKYPGSNCAPSLLIGLINMFMMKSRN 670
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 438 YLIWVFLRVPYW-VNSYFLCLSMIYQSLL 521
YL+WV W + + F C+SM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 554 DTSLLFKIKRQLEDYDDVNDAIS 622
DT L+ ++K+ E YDD+ DA++
Sbjct: 1110 DTGLIEELKKLKEQYDDIPDALN 1132
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 438 YLIWVFLRVPYW-VNSYFLCLSMIYQSLL 521
YL+WV W + + F C+SM+Y L+
Sbjct: 114 YLLWVDFDFKIWFLQTMFACISMVYTILV 142
>AF025451-13|AAB71198.2| 142|Caenorhabditis elegans Hypothetical
protein C24H12.2 protein.
Length = 142
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -1
Query: 153 CTEMGLKLEGSKVLPDLNKGIILLHFIRS 67
CTE LKLEG VLP + ++ FIRS
Sbjct: 67 CTEYVLKLEGGPVLPHCAE--MMTQFIRS 93
>AC084159-9|AAK39358.1| 569|Caenorhabditis elegans Hypothetical
protein Y73B3A.4 protein.
Length = 569
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 485 FLVSINDLPKFIETRHEVVLFTD--DTSLLFKIKRQLEDYDDVNDAISRVV 631
F++S LP FI T + V+ TD +T + I+ + DV I RV+
Sbjct: 395 FVLSGTSLPSFIATSGDTVVITDLGNTQKVILIRLDDSKWKDVKFEIIRVI 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,457,501
Number of Sequences: 27780
Number of extensions: 288292
Number of successful extensions: 698
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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