Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11c04
(565 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X88562-1|CAA61252.1| 551|Homo sapiens cystathionine beta-syntha... 89 1e-17
X82166-1|CAA57656.1| 551|Homo sapiens cystathionine beta-syntha... 89 1e-17
L19501-1|AAA19874.1| 551|Homo sapiens cystathionine beta-syntha... 89 1e-17
L14577-1|AAA98524.1| 551|Homo sapiens cystathionine beta-syntha... 89 1e-17
BT007154-1|AAP35818.1| 551|Homo sapiens cystathionine-beta-synt... 89 1e-17
BC011381-1|AAH11381.1| 551|Homo sapiens CBS protein protein. 89 1e-17
BC010242-1|AAH10242.1| 551|Homo sapiens CBS protein protein. 89 1e-17
BC007257-1|AAH07257.1| 551|Homo sapiens CBS protein protein. 89 1e-17
BC000440-1|AAH00440.1| 551|Homo sapiens CBS protein protein. 89 1e-17
AF042836-2|AAC64683.1| 551|Homo sapiens cystathionine beta-synt... 89 1e-17
AF042836-1|AAC64684.1| 565|Homo sapiens cystathionine beta-synt... 89 1e-17
AL137314-1|CAB70691.1| 475|Homo sapiens hypothetical protein pr... 89 1e-17
AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein. 36 0.13
U97698-1|AAC51370.1| 421|Homo sapiens secretory mucin MUC6 prot... 35 0.17
AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens ... 35 0.23
AK092533-1|BAC03911.1| 325|Homo sapiens protein ( Homo sapiens ... 35 0.23
AL162586-10|CAI39769.1| 375|Homo sapiens folylpolyglutamate syn... 31 2.8
L04288-1|AAA35734.2| 1462|Homo sapiens cyclophilin-related prote... 31 3.7
BX957215-1|CAF29506.1| 1162|Homo sapiens hypothetical protein pr... 31 3.7
BX640751-1|CAE45859.1| 590|Homo sapiens hypothetical protein pr... 31 3.7
AF184110-1|AAD56402.1| 1462|Homo sapiens cyclophilin-related pro... 31 3.7
AL834165-1|CAD38868.1| 707|Homo sapiens hypothetical protein pr... 29 8.5
>X88562-1|CAA61252.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>X82166-1|CAA57656.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>L19501-1|AAA19874.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>L14577-1|AAA98524.1| 551|Homo sapiens cystathionine beta-synthase
protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>BT007154-1|AAP35818.1| 551|Homo sapiens
cystathionine-beta-synthase protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>BC011381-1|AAH11381.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>BC010242-1|AAH10242.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>BC007257-1|AAH07257.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>BC000440-1|AAH00440.1| 551|Homo sapiens CBS protein protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>AF042836-2|AAC64683.1| 551|Homo sapiens cystathionine
beta-synthase major isoform protein.
Length = 551
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>AF042836-1|AAC64684.1| 565|Homo sapiens cystathionine
beta-synthase minor isoform protein.
Length = 565
Score = 89.0 bits (211), Expect = 1e-17
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Frame = +3
Query: 99 EIKASALDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASG 269
+I L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G
Sbjct: 75 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 134
Query: 270 ELKPKEPVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
LKP + ++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 135 TLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 192
>AL137314-1|CAB70691.1| 475|Homo sapiens hypothetical protein
protein.
Length = 475
Score = 88.6 bits (210), Expect = 1e-17
Identities = 48/112 (42%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Frame = +3
Query: 117 LDLIGNTPIVALDRLHPGPG---RILAKCEFMNPGASIKCRSSLCMIKKALASGELKPKE 287
L IG+TP+V ++++ G +LAKCEF N G S+K R SL MI+ A G LKP +
Sbjct: 5 LKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGD 64
Query: 288 PVVEVTSGNQGCGLAVVCAVLGHPLTLAMSKGNSAQRAIHMEALGAKCVRVP 443
++E TSGN G GLA+ AV G+ + M + S+++ + ALGA+ VR P
Sbjct: 65 TIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTP 116
>AB058756-1|BAB47482.1| 708|Homo sapiens KIAA1853 protein protein.
Length = 708
Score = 35.5 bits (78), Expect = 0.13
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 377 KRKQCSKGHTYGGSRGQMRKSSASGRHVRKRDFERCKSSGGSRPKNCKGNRRILCESVQQ 556
K+K+ SK H S + R+ S+S ++RD +R K SRP+ +R C S Q
Sbjct: 231 KKKKSSKKHKRRRSFSKKRRHSSSSPKSKRRDEKRHKKQSRSRPRKSHRHRHHRCPSRSQ 290
Score = 29.9 bits (64), Expect = 6.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 380 RKQCSKGHTYGGSRGQMRKSSASGRHVRKRDFERCKSSGGSRPKN 514
RK+ + +Y S + +K +S +H R+R F + + S PK+
Sbjct: 214 RKKRRRSSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKS 258
>U97698-1|AAC51370.1| 421|Homo sapiens secretory mucin MUC6
protein.
Length = 421
Score = 35.1 bits (77), Expect = 0.17
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = -1
Query: 511 LRPTSSTAFTSFKVTFPYVPSTCGTLTHLAPRASICMAL*ALFPFDMASVSG*PNTAHTT 332
L P+S A T+ + T P+ S+ TL+ L P +++ ++ ++++ P+T TT
Sbjct: 179 LFPSSPAASTTIRATLPHTISSPFTLSALLPISTVTVSPTPSSHLASSTIAF-PSTPRTT 237
Query: 331 ASPH--P*FPDVTSTTGSLGFSS 269
AS H P F ++T+GS ++
Sbjct: 238 ASTHTAPAFSSQSTTSGSTSLTT 260
Score = 29.9 bits (64), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 529 PVSFTILRPTSSTAFTSFKVTFPYVPSTCGTLTHLAPRAS 410
P+S + PT S+ S + FP P T + TH AP S
Sbjct: 209 PISTVTVSPTPSSHLASSTIAFPSTPRTTAS-THTAPAFS 247
>AK096772-1|BAC04860.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ39453 fis, clone PROST2010046, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 577
Score = 34.7 bits (76), Expect = 0.23
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = -1
Query: 532 APVSFTILRPTSSTAFTSFKVTFPYVPSTCGTLTHLAPRASICMAL*ALFPFDMASVSG* 353
A VS + L P+S A T+ + T P+ S+ TL+ L P +++ ++ ++++
Sbjct: 328 ASVSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPISTVTVSPTPSSHLASSTIAF- 386
Query: 352 PNTAHTTASPH--P*FPDVTSTTGSLGFSS 269
P+T TTAS H P F ++T+ S ++
Sbjct: 387 PSTPRTTASTHTAPAFSSQSTTSRSTSLTT 416
>AK092533-1|BAC03911.1| 325|Homo sapiens protein ( Homo sapiens
cDNA FLJ35214 fis, clone PROST1000512, highly similar to
Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
Length = 325
Score = 34.7 bits (76), Expect = 0.23
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Frame = -1
Query: 532 APVSFTILRPTSSTAFTSFKVTFPYVPSTCGTLTHLAPRASICMAL*ALFPFDMASVSG* 353
A VS + L P+S A T+ + T P+ S+ TL+ L P +++ ++ ++++
Sbjct: 159 ASVSASPLFPSSPAASTTIRATLPHTISSPFTLSALLPISTVTVSPTPSSHLASSTIAF- 217
Query: 352 PNTAHTTASPH--P*FPDVTSTTGSLGFSS 269
P+T TTAS H P F ++T+ S ++
Sbjct: 218 PSTPRTTASTHTAPAFSSQSTTSRSTSLTT 247
>AL162586-10|CAI39769.1| 375|Homo sapiens folylpolyglutamate
synthase protein.
Length = 375
Score = 31.1 bits (67), Expect = 2.8
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = +2
Query: 290 SCGSDIGKSRMWARRRVCCIGSSANACHVKRKQCSKGHTYGGSRGQMRKSSASGRHVRKR 469
+CGS G A RR C G S V+ ++ GS + R +A GR V R
Sbjct: 301 TCGSGFGTRSGRAGRRCCGAGPSPGTWTVRTPPAARRPACAGSARRCR--AARGRAVAPR 358
Query: 470 DFERCKS 490
FE C S
Sbjct: 359 -FESCSS 364
>L04288-1|AAA35734.2| 1462|Homo sapiens cyclophilin-related protein
protein.
Length = 1462
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 392 SKGHTYGGSRG--QMRKSSASGRHVRKRDFERCKSSGGSRPKNCKGNRR 532
SK H+ SRG + R +S S H R R R S G R + K R+
Sbjct: 521 SKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRK 569
>BX957215-1|CAF29506.1| 1162|Homo sapiens hypothetical protein
protein.
Length = 1162
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 392 SKGHTYGGSRG--QMRKSSASGRHVRKRDFERCKSSGGSRPKNCKGNRR 532
SK H+ SRG + R +S S H R R R S G R + K R+
Sbjct: 221 SKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRK 269
>BX640751-1|CAE45859.1| 590|Homo sapiens hypothetical protein
protein.
Length = 590
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 392 SKGHTYGGSRG--QMRKSSASGRHVRKRDFERCKSSGGSRPKNCKGNRR 532
SK H+ SRG + R +S S H R R R S G R + K R+
Sbjct: 268 SKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRK 316
>AF184110-1|AAD56402.1| 1462|Homo sapiens cyclophilin-related
protein protein.
Length = 1462
Score = 30.7 bits (66), Expect = 3.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 392 SKGHTYGGSRG--QMRKSSASGRHVRKRDFERCKSSGGSRPKNCKGNRR 532
SK H+ SRG + R +S S H R R R S G R + K R+
Sbjct: 521 SKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRK 569
>AL834165-1|CAD38868.1| 707|Homo sapiens hypothetical protein
protein.
Length = 707
Score = 29.5 bits (63), Expect = 8.5
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 171 PGRILAKC-EFMNPGASIKCRSSLCMIKKALASGELKPKEPVVEVTSGNQGCGLAVVCAV 347
PG A C + P AS K C +ALASG+ +P V + +
Sbjct: 461 PGEAGAVCLKKETPQASEKVDPGSCRKAEALASGKGEP----VSLGKADSAPSRKTESPS 516
Query: 348 LGH--PLTLAMSKGNSAQRAIHMEALGAKCVRVPQ-VEGTYGNV 470
LG PL+L +K +S+ R + +ALG+ R P+ G+ G V
Sbjct: 517 LGKVVPLSLEKTKPSSSSRQLDRKALGS--ARSPEGARGSEGRV 558
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,727,352
Number of Sequences: 237096
Number of extensions: 2148064
Number of successful extensions: 4201
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 4053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4199
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5703349406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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