Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b23
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    31   0.20 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   1.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   3.2  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   5.6  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   9.7  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.7  

>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -2

Query: 315 NVAEEWLR--SRPQQGQNRRHDSH---RCGRDSQLPPEHIHLRQQRPQGGEEKE 169
           NVAE  L   S P+  +N +  S    + GRD +  P  +H   +RP+ GE+ E
Sbjct: 696 NVAETILEVTSSPKSSENSQKQSEITKKRGRDEEDEPSDLHSSPKRPKTGEDGE 749


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 186 GGEEKEEMRLYRQQAFVNLHFMQISLSDGVF 94
           GGE K+   L+  +AFV LH   I+ ++GVF
Sbjct: 650 GGEGKQGTILHIYRAFVFLHNRDIAENNGVF 680


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 247 AMGIVTAILPL----LWATAKPLFGYVVDYWPAHRKLV 348
           ++G VTA LP+    +  T  PL G VVD+   H K +
Sbjct: 656 SIGFVTATLPVGGVTIGITVTPLSGSVVDFLLKHSKTI 693


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = -2

Query: 306 EEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQAFVNLH 127
           E+ LR + +    +  +  +  ++     E    +++R Q   EKEE +  RQ+  +N  
Sbjct: 110 EKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQILNKE 169

Query: 126 FMQISLSD 103
             Q+ L++
Sbjct: 170 RQQLKLNN 177


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 547 LRNTTLIDTAYLDSDVTNSTCLTLNMDLS 633
           L   TL+ T    S   N+TC TLN  LS
Sbjct: 23  LHTGTLVSTFRQSSPAKNATCTTLNHLLS 51


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 412 PGWARTRGN-STSRS*PILAA*ILASCAPANNLQRSRRVASQSPTAGAESPSRFP 251
           P WA    + S+S S P   A   +S AP+N     +  A QS  A + +PS  P
Sbjct: 407 PPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLP 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,067
Number of Sequences: 5004
Number of extensions: 53043
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)