Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b23
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    34   0.078
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    34   0.078
Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Relate...    31   0.73 
AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical...    28   6.8  
AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   9.0  
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        27   9.0  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    27   9.0  

>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
            F40E10.4 protein.
          Length = 1410

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 481  QSLNLEKYTCHWNCTPGTFDVYLRNTTLIDTAYLDSDVTNSTC 609
            ++ +  KYTC  NCTPG + V+  N   ID  Y    + N+TC
Sbjct: 885  ETTSSRKYTC--NCTPGFYGVHCENQ--IDACYGSPCLNNATC 923


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
            protein F40E10.4 protein.
          Length = 1410

 Score = 34.3 bits (75), Expect = 0.078
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 481  QSLNLEKYTCHWNCTPGTFDVYLRNTTLIDTAYLDSDVTNSTC 609
            ++ +  KYTC  NCTPG + V+  N   ID  Y    + N+TC
Sbjct: 885  ETTSSRKYTC--NCTPGFYGVHCENQ--IDACYGSPCLNNATC 923


>Z68010-2|CAA92010.2|  433|Caenorhabditis elegans Hypothetical
           protein T01C1.2 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 306 EEWLRSRPQQGQNRRHDSH 250
           EEW RSRP++GQ R++D +
Sbjct: 328 EEWKRSRPKRGQYRKYDKN 346


>AB236333-1|BAE45265.1|  433|Caenorhabditis elegans MBlk-1 Related
           factor-1 protein.
          Length = 433

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 306 EEWLRSRPQQGQNRRHDSH 250
           EEW RSRP++GQ R++D +
Sbjct: 328 EEWKRSRPKRGQYRKYDKN 346


>AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical
           protein F28B3.5b protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 259 VTAILPLLW-ATAKPLFGYVVDY---WPAHRKLVFMLLISVMTGSYCCLW 396
           +   L ++W A   PLFGY+ +    W  +R LV   L   + GS+  +W
Sbjct: 43  IAQTLFMVWNAINDPLFGYLQEIRGSWLTNRLLVIKTLSPFLVGSFVFMW 92


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 259 VTAILPLLW-ATAKPLFGYVVDY---WPAHRKLVFMLLISVMTGSYCCLW 396
           +   L ++W A   PLFGY+ +    W  +R LV   L   + GS+  +W
Sbjct: 43  IAQTLFMVWNAINDPLFGYLQEIRGSWLTNRLLVIKTLSPFLVGSFVFMW 92


>AL021497-3|CAA16405.1|  613|Caenorhabditis elegans Hypothetical
           protein Y51A2D.5 protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = -1

Query: 637 LRLSPCSGSDRSNS*RHCPSMLYR*GSCSAGTHRTFPEYNSSGTCTFLGSGTDRFVSNQR 458
           L LS C     S     C     R G C    H     Y+S+G CT   +G D+  SN  
Sbjct: 399 LMLSNCDSCVTSEHCGFCEDSETRTGFCLPVDHNDVTLYSSTGLCT---NGLDK--SNSS 453

Query: 457 FP 452
           FP
Sbjct: 454 FP 455


>Z82285-9|CAB05303.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 644 SRTSLKSMFRVRQVEFVTSLSKYAVSIRVVFRRYTSNVPGVQFQWH 507
           S +SL+S  +  Q  F T  S      R+VF  Y      VQ  WH
Sbjct: 147 SCSSLQSRIQPEQFNFETFKSGSVAFARIVFEDYEFIEKQVQMSWH 192


>Z82264-13|CAB05168.1|  513|Caenorhabditis elegans Hypothetical
           protein T28F3.9 protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 644 SRTSLKSMFRVRQVEFVTSLSKYAVSIRVVFRRYTSNVPGVQFQWH 507
           S +SL+S  +  Q  F T  S      R+VF  Y      VQ  WH
Sbjct: 147 SCSSLQSRIQPEQFNFETFKSGSVAFARIVFEDYEFIEKQVQMSWH 192


>Z22176-1|CAA80142.1|  724|Caenorhabditis elegans Hypothetical
           protein ZK1098.1 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -2

Query: 309 AEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEK--EEMRLYRQQ 145
           A+  L   PQ  +  R D H   ++  L     H++Q   +  EEK  EE RL RQQ
Sbjct: 388 AQRILYENPQFAE--RKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQ 442


>U70848-1|AAB09107.2|  434|Caenorhabditis elegans Hypothetical
           protein C43G2.1 protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 249 RCGRDSQLPPEHIHLRQQRPQGGEEKE 169
           R G D +  P+H  LR +R +GG+ +E
Sbjct: 92  RAGSDDEAMPKHTILRYRRKKGGQWRE 118


>AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 644 SRTSLKSMFRVRQVEFVTSLSKYAVSIRVVFRRYTSNVPGVQFQWH 507
           S +SL+S  +  Q  F T  S      R+VF  Y      VQ  WH
Sbjct: 147 SCSSLQSRIQPEQFNFKTFKSGSVAFARIVFEDYEFIEKQVQMSWH 192


>AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 644 SRTSLKSMFRVRQVEFVTSLSKYAVSIRVVFRRYTSNVPGVQFQWH 507
           S +SL+S  +  Q  F T  S      R+VF  Y      VQ  WH
Sbjct: 147 SCSSLQSRIQPEQFNFKTFKSGSVAFARIVFEDYEFIEKQVQMSWH 192


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -3

Query: 278 RGRIAVTIPIAAGVTPSCRP---NTFICGNSGPRAAKKKKKCAFTG 150
           RGR    +P   G  P+C P   N   C N G      K+ C   G
Sbjct: 499 RGRCGRDVPPLEGEAPTCNPDDANAHCCSNGG-YCGNSKEHCECNG 543


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 270  NRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQ 148
            NR HD  R   D   PP  + +  + PQ   ++E MR + +
Sbjct: 888  NRGHDQDRSFLDHYYPPMVVVVETESPQIVRDQEMMRQFEE 928


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
            protein Y47D3A.6a protein.
          Length = 1109

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 270  NRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQ 148
            NR HD  R   D   PP  + +  + PQ   ++E MR + +
Sbjct: 887  NRGHDQDRSFLDHYYPPMVVVVETESPQIVRDQEMMRQFEE 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,037,246
Number of Sequences: 27780
Number of extensions: 322800
Number of successful extensions: 1051
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)