Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11b23
(664 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 24 1.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.4
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 4.5
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 7.9
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 7.9
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 7.9
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.8 bits (49), Expect = 1.5
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 294 RSRPQQGQNRRHDS-HRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQ 145
+S+P Q H S H + P + +QQ+PQ +++++ + +Q+
Sbjct: 806 QSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 77 NSADEGFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 77 NSADEGFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 77 NSADEGFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 77 NSADEGFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 77 NSADEGFDGTYQTSVVVTHDGSCLYVPPGI 106
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 77 NSADEGFDGTYQTSVVVTHNGSCLYVPPGI 106
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 145 NSADEGFDGTYQTNVVVTHNGSCLYVPPGI 174
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 351 HAANIGYDRLVLLPLVLAHPGNRRAAPPGI 440
++A+ G+D +V+ H G+ PPGI
Sbjct: 145 NSADEGFDGTYQTNVVVTHNGSCLYVPPGI 174
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 460 VDLRRNDQSLNLEKYT 507
+D R ND S+N EK T
Sbjct: 429 IDYRNNDLSINEEKRT 444
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/39 (23%), Positives = 15/39 (38%)
Frame = +1
Query: 352 MLLISVMTGSYCCLWFXXXXXXXXXXXXXYVYKLETVDL 468
MLLI + G+ C +W ++ L D+
Sbjct: 66 MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/39 (23%), Positives = 15/39 (38%)
Frame = +1
Query: 352 MLLISVMTGSYCCLWFXXXXXXXXXXXXXYVYKLETVDL 468
MLLI + G+ C +W ++ L D+
Sbjct: 66 MLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.4 bits (43), Expect = 7.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 239 VTPSCRPNTFICGNSGPRAAKK 174
VTPSCR + + P A+K
Sbjct: 97 VTPSCRRQRYNIAAANPLLAEK 118
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,753
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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