Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11b21
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 37 0.003
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 33 0.028
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 32 0.064
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.11
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 31 0.11
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 31 0.20
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 29 0.79
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 27 3.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 26 5.6
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 26 5.6
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 25 7.4
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 7.4
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 7.4
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 7.4
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 7.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Frame = +3
Query: 90 VRKQKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNHQE-- 263
+++++E+KQ ++ QK E+ ++ KE+ EK+ ++ Q+ + E R + +E
Sbjct: 646 LKREQEKKQ--QELERQKREEKQKQKER---EKKLKKQQQEADREKMAREQRLREEEEKR 700
Query: 264 VVAEEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGK 380
++ E R + E +RR+ E L ++ +++E E K
Sbjct: 701 ILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAK 739
Score = 30.3 bits (65), Expect = 0.26
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Frame = +3
Query: 93 RKQKERKQFTYKMNTQ-KCEQNKEAKEKTFVEKQAERMQRL---RNLHTARNE-ARTQNH 257
++++E K+ K + K +Q K AKE+ ++AER+ + L R E AR +
Sbjct: 583 KQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKRE 642
Query: 258 QEVVAEEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDRVKLLNISAIEAERLE 437
++ + E K KR + + E +KK ++ + E DR K+ + E +
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEA---DREKMAREQRLREEEEK 699
Query: 438 R 440
R
Sbjct: 700 R 700
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 33.5 bits (73), Expect = 0.028
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = +3
Query: 96 KQKERKQFTYKMNTQKCEQNKEAKE--KTFVEKQAERMQRLRNLHTARNEARTQNHQEVV 269
K+ + KQ T ++ ++ +E E K+ EK+ +++ + + E T EVV
Sbjct: 81 KRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEELTVESMEVV 140
Query: 270 AEEAR-NKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDR 392
+ L T Y +R Q W+ ED+KK++E + + Y++
Sbjct: 141 RLTRQVETLSTQYSIQRSQ--WVREDEKKKKEIQDLKELYEK 180
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 32.3 bits (70), Expect = 0.064
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = +3
Query: 99 QKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNHQEVVAEE 278
+++RK++ + +K E+ K A+ + +K+ ER+ ++L R R + ++E
Sbjct: 31 KEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLREQRK--RELAERLAFSKE 88
Query: 279 ARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDR-VKLLNISAIEAERLERXXXXX 455
+ L + E+ +++ D ++ E + YD K + + +E + E
Sbjct: 89 LNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDEDDKHVTVEIVEDDDDEEIAY-- 146
Query: 456 NPDQGFST 479
P +GF T
Sbjct: 147 -PKEGFVT 153
>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 163
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 483 EHATIRQYNRLVKNMPPADMERYEK--QKQKYGEAFYGGPNVIIHGMHEDHKEAVDKMVD 656
E++ + N +K++PPA ++ E+ QK+K E GG N H++ K ++K+ D
Sbjct: 65 ENSWVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGKN------HDNLKRKLNKVGD 118
Query: 657 DL 662
+L
Sbjct: 119 EL 120
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 147 EQNKEAKEKTFVEKQAERMQRLRN--LHTARNEARTQNHQEVVAEEARNKLPTNYEAKRR 320
EQ+ ++ F EKQ +R L R EA Q ++ EE R K E K +
Sbjct: 92 EQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKD--EEERRKKELMEKEKKEK 149
Query: 321 QAEWLVEDQKKREEAE 368
+ L+E+QK +E +
Sbjct: 150 ERIRLIEEQKHKENEQ 165
Score = 28.3 bits (60), Expect = 1.0
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +3
Query: 87 FVRKQKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTAR---NEARTQNH 257
F R+ E+K+ + Q+ + +E ++K +EK+ + +R+R + + NE R
Sbjct: 113 FNRELLEKKRI--EAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQ 170
Query: 258 QEVVA----EEARNK 290
+++ A EEAR K
Sbjct: 171 EQIDAKRKEEEAREK 185
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 255 HQEVVAEEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDRVKLLNISAIEAERL 434
HQ+V AE + E KR+ A + E K+ E ++EG+ ++K +N + EA+ +
Sbjct: 206 HQQVSAERQKRAEILESEGKRQAAINVAEGDKQAEILDSEGQ---KIKTINSALAEAQAI 262
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 531 VACFSLTCCIVVLWHVHTSRTLGLGSFSFFYVRVALLLSQKYSTI 397
+ C L C + L +H SRT+GL +F + L+ Q +S +
Sbjct: 1045 IICEPLLCTLCHLLVIHDSRTVGLVVNAFLAITPLLVSEQAHSLV 1089
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 314 FSFIVRW*LVPSLFCYDFLVILCPSFVS 231
F ++R+ ++P YD ++ILC +++S
Sbjct: 225 FDSMIRYSVIPKASLYDTVLILCSTYIS 252
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.2
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Frame = +3
Query: 111 KQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNHQEVVAEEARNK 290
K+ T+K+ +K +NK K + K R+++L T +E Q + + +++
Sbjct: 449 KRETHKILLEKISKNKRLKFELNDRKSHASQMRMKSLATLASE------QPIQKRKRKDQ 502
Query: 291 LPTNYEAKRRQAEWLV-EDQKKREEAETEGKNYDRVKLLN-ISAIEAERLE 437
N+ A R +W V D E+ E E R KLL+ I ++E + LE
Sbjct: 503 SEDNFGA--RDEDWKVYHDVLTAEQLEEE-----RKKLLDQIYSLEKQLLE 546
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 21 VNKYIQLNNISNILSV*SM*VIFVRKQKERKQFT----YKMNTQKCEQNKEAKEKTFVEK 188
VN ++L+N + L S ++ + K K+ + + Q+CE E KT VEK
Sbjct: 1058 VNSQLELHNSAYSLDAISQNLLPMLKDLHSKELLPAICFNYDRQECEYLAEIVFKTLVEK 1117
Query: 189 QAE 197
+ E
Sbjct: 1118 ERE 1120
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 5.6
Identities = 22/116 (18%), Positives = 51/116 (43%)
Frame = +3
Query: 93 RKQKERKQFTYKMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNHQEVVA 272
+KQ+E K+F ++ K E+ + K++T E++ L+ HT + + ++
Sbjct: 202 KKQRELKKFGKQVQLAKQEERQREKKETL-----EKINLLKRKHTGGDLTTEDDFDIALS 256
Query: 273 EEARNKLPTNYEAKRRQAEWLVEDQKKREEAETEGKNYDRVKLLNISAIEAERLER 440
+ + + + + + + QKK E+ G + R K ++ ++ A R
Sbjct: 257 SASADTFKKGSRSTKSRPQPNPKRQKKNEKYGFGGPKH-RSKSNDLDSLAATEFGR 311
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 512 PVVLS-YCGMFIRREPLVWVLFLFFTFESLCFYRRNIQ 402
PVV + C +F RR P++ +F+F F ++IQ
Sbjct: 127 PVVWAPMCELFGRRRPMIIAVFIFCIFHIAVATAKDIQ 164
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +3
Query: 339 EDQKKREEAETEGKNYDRVKLLN-ISAIEAERLERXXXXXNPDQ-----GFSTYEHATIR 500
ED+ +++E E + YD + LLN A++ + +E+ D GFS Y+ ++
Sbjct: 457 EDEIEQDEIERVLQKYDNIPLLNEEQALKEKNVEKDFIQWKDDYYRSKVGFSYYDEEALK 516
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 216 NLHTARNEARTQNHQEVVAEEARNKLPTNYEAKRRQAE 329
+L T N ART N + E NK+ T E K + E
Sbjct: 1135 DLMTMFNNARTYNEEGSFVYEDANKMQTAMETKIEELE 1172
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 126 KMNTQKCEQNKEAKEKTFVEKQAERMQRLRNLHTARNEARTQNHQ 260
K Q + ++ EK F E ++ R LHT R +QN Q
Sbjct: 142 KNELQSSTEEIDSTEKDFDELHKVILKVERELHTLRQNTPSQNEQ 186
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 7.4
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +3
Query: 213 RNLHTARNEARTQNHQEVV---AEEARN---KLPTNYEAKRRQAEWLVEDQKKREEAETE 374
+N + AR R + +V+ AEE + KL + YE + VEDQ EEA+ E
Sbjct: 71 QNDNDARKNLRKRLRNDVLKDLAEEIQGCEKKLESLYEEVAKAKAKAVEDQLALEEADKE 130
Query: 375 GK 380
K
Sbjct: 131 AK 132
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 583 NASPYFCFCFSYRSISAGGMFFTNL 509
N P+FCF F + S FT+L
Sbjct: 103 NVVPFFCFFFYFSLFSFFSFLFTSL 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,106
Number of Sequences: 5004
Number of extensions: 50244
Number of successful extensions: 217
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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