Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b18
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              29   0.042
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.90 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 267 CTREMKPVCGSDGITYNNDCLLNCA 341
           C R  +PVC S+G  Y N C L+ A
Sbjct: 110 CPRRHRPVCASNGKIYANHCELHRA 134


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 333 NCATINDSRLGIEYYGPCADKVIVVDPGTQGDYHG 437
           N  TIN+S    E Y  C DK   ++   +G   G
Sbjct: 51  NSGTINESEFNDENYWQCNDKKTDIEETGRGKGRG 85


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
 Frame = -2

Query: 316 LYVIPSLPQTGFISRVHVHEGYLLGPSTILTSSAQRPEYKM------LRPGFVAAAQFNR 155
           LY   SL Q        +   +L G + + T   + P   +      L  GF+A A+ N 
Sbjct: 35  LYRASSLQQRRGGLEYFLLSAFLFGANALFTPGQELPARGLTAVFLGLNLGFLAWAKHNP 94

Query: 154 QALSYVWLSLPH 119
           +    +W  +PH
Sbjct: 95  RGKDALWSLVPH 106


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 510 ERQMTAFIEREKDLFLFNKI 569
           E+   +F+ERE+ L + N I
Sbjct: 396 EKDQASFLERERFLGIINNI 415


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 510 ERQMTAFIEREKDLFLFNKI 569
           E+   +F+ERE+ L + N I
Sbjct: 396 EKDQASFLERERFLGIINNI 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,710
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)