Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b16
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    30   0.008
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.14 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.18 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           25   0.32 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   0.73 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   2.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   3.0  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   3.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   3.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   3.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   6.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   6.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   6.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   6.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 0.008
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 159 DGHSIYGKSFSHSYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           DG+ +     + SY   + C+G   +Y + V K G +WIL
Sbjct: 98  DGNPLIAPYPNWSYNDVKYCDGLTSVYRMQVDKCGRLWIL 137


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+ ++++C G V  Y + + K   +WIL
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWIL 142


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.4 bits (53), Expect = 0.18
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+ ++++C G V  Y + + K   +W+L
Sbjct: 115 SWANYKDCSGIVSAYKIAIDKFDRLWVL 142


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.6 bits (51), Expect = 0.32
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -3

Query: 245 YLILDLLFGSQIVSV----SALC--LATVGSTRMKTGIAFTANHFLTVILHGENAKGRFN 84
           +L+   LFG Q +++    +AL   +   G   + +G   +  ++ T+I   +   G  N
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66

Query: 83  CTSSKSQNQV 54
           C SSK +  +
Sbjct: 67  CDSSKFEEDL 76


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 0.73
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+  + +C G V  + + V K   +W+L
Sbjct: 117 SFAKYEDCSGIVSAFKIAVDKFDRLWVL 144


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 111 WRECEGKVQLYLL 73
           W++CEGK+  YL+
Sbjct: 200 WKQCEGKID-YLV 211


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+  + +C G V    L + K   +W+L
Sbjct: 111 SFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
 Frame = +3

Query: 120 NCEKMI-CRKCYARLHPR 170
           NCE      KCYA L PR
Sbjct: 123 NCEYAYRFNKCYAELSPR 140


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+  + +C G V    L + K   +W+L
Sbjct: 111 SFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+  + +C G V    L + K   +W+L
Sbjct: 111 SFAKYDDCSGIVSASKLAIDKCDRLWVL 138


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/28 (21%), Positives = 15/28 (53%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+  + +C G V  + + + +   +W+L
Sbjct: 116 SFAKYEDCSGIVSAHKIAIDEYERLWVL 143


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 275 IVTINFPFGYYLILDLLF 222
           I  I FP  Y++ L   F
Sbjct: 465 IARITFPVAYFMFLTFFF 482


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 275 IVTINFPFGYYLILDLLF 222
           I  I FP  Y++ L   F
Sbjct: 451 IARITFPVAYFMFLTFFF 468


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 275 IVTINFPFGYYLILDLLF 222
           I  I FP  Y++ L   F
Sbjct: 485 IARITFPVAYFMFLTFFF 502


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 275 IVTINFPFGYYLILDLLF 222
           I  I FP  Y++ L   F
Sbjct: 434 IARITFPVAYFMFLTFFF 451


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 128 LTVILHGENAKGRFNCTSSKSQN 60
           LT   +  + + +++CT  KSQ+
Sbjct: 402 LTRAAYSRDVRPKYDCTLEKSQD 424


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 128 LTVILHGENAKGRFNCTSSKSQN 60
           LT   +  + + +++CT  KSQ+
Sbjct: 402 LTRAAYSRDVRPKYDCTLEKSQD 424


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 128 LTVILHGENAKGRFNCTSSKSQN 60
           LT   +  + + +++CT  KSQ+
Sbjct: 402 LTRAAYSRDVRPKYDCTLEKSQD 424


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 6/28 (21%), Positives = 15/28 (53%)
 Frame = -2

Query: 123 SYTSWRECEGKVQLYLL*VSKPGEVWIL 40
           S+  +++C   V  + + + K   +W+L
Sbjct: 112 SFAEFKDCSKIVSAFKIAIDKFDRLWVL 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,304
Number of Sequences: 438
Number of extensions: 1741
Number of successful extensions: 19
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)