Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11b13
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 48 6e-06
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 36 0.021
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 30 1.3
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 30 1.3
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 29 3.1
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 29 3.1
Z77652-13|CAB01120.2| 308|Caenorhabditis elegans Hypothetical p... 29 4.1
AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical ... 27 9.5
AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical... 27 9.5
AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8 prot... 27 9.5
AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical ... 27 9.5
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 48.0 bits (109), Expect = 6e-06
Identities = 27/95 (28%), Positives = 43/95 (45%)
Frame = -2
Query: 497 LTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLY 318
+ D K + G ++LD A+D + L+ L SL LL W+ RS
Sbjct: 1 MNDWTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFR 60
Query: 317 IKYNNVFHGPKLAFKGLMQGSSLSPILYNLYTSQI 213
++ K A G+ QG+ LSP+L+ +Y + I
Sbjct: 61 VRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDI 95
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -2
Query: 458 AICVFLDVQGAYDNVDLHQLIR-VLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKL 282
AI LD++ A+D V +L ++ + G K+ W+ N R + ++N +
Sbjct: 469 AIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHT 528
Query: 281 AFKGLMQGSSLSPILYNLY 225
G+ QGS +SP L+ Y
Sbjct: 529 LLGGVPQGSVISPNLFTFY 547
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 449 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA--F 276
VF+D + A+D+V+ + + L G G + + Y ++ + FH P
Sbjct: 689 VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECY--KNCTTNFTP-FHRPVAVPVT 745
Query: 275 KGLMQGSSLSPILYNLYTSQIYRHVT 198
KG+ QG +SP L++ ++R ++
Sbjct: 746 KGVRQGDPISPNLFSACLEHVFRKLS 771
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = -2
Query: 449 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA--F 276
VF+D + A+D+V+ + + L G G + + Y ++ + FH P
Sbjct: 428 VFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLKECY--KNCTTNFTP-FHRPVAVPVT 484
Query: 275 KGLMQGSSLSPILYNLYTSQIYRHVT 198
KG+ QG +SP L++ ++R ++
Sbjct: 485 KGVRQGDPISPNLFSACLEHVFRKLS 510
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = -2
Query: 449 VFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLA--F 276
VF+D + A+D V+ + + L G G + + Y ++ + FH P
Sbjct: 518 VFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLKECY--KNCTTNFTP-FHRPVAVPVT 574
Query: 275 KGLMQGSSLSPILYNLYTSQIYRHVT 198
KG+ QG +SP L++ ++R ++
Sbjct: 575 KGVRQGDPISPNLFSACLEHVFRKLS 600
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 154 SCPTFKFQRLILVTDIMKLMDFDENNQTKHGNSLANN 44
SC F+++ + V I L+D + N Q KHG SL+ N
Sbjct: 653 SCFQFRYRGMKGVLAIDPLLDKERNWQEKHGISLSKN 689
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 154 SCPTFKFQRLILVTDIMKLMDFDENNQTKHGNSLANN 44
SC F+++ + V I L+D + N Q KHG SL+ N
Sbjct: 653 SCFQFRYRGMKGVLAIDPLLDKERNWQEKHGISLSKN 689
>Z77652-13|CAB01120.2| 308|Caenorhabditis elegans Hypothetical
protein C06B3.11 protein.
Length = 308
Score = 28.7 bits (61), Expect = 4.1
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 677 LVITMIIFL-VYLNLMTEVSGACFYLTLFILKNLTWLCLQERIQPLVLTIFLILCFKICT 501
L I +I FL + N + V+ Y T+F K L L I PLV + +L L FK CT
Sbjct: 95 LHIVLISFLMISFNRLCAVAFPIAYQTVFGKKWLMILISINWIVPLVASTYL-LTFKQCT 153
Query: 500 F 498
F
Sbjct: 154 F 154
>AL590342-5|CAC35862.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 680 SLVITMIIFLVYLNLMTEVSGACFYLTLFILKNL 579
SL +++ ++L+ LNL EVS C Y+ + I+ +
Sbjct: 300 SLTLSLNLYLI-LNLSLEVSNECKYIPVLIINEI 332
>AL032627-24|CAA21552.1| 507|Caenorhabditis elegans Hypothetical
protein Y66A7A.8 protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 680 SLVITMIIFLVYLNLMTEVSGACFYLTLFILKNL 579
SL +++ ++L+ LNL EVS C Y+ + I+ +
Sbjct: 300 SLTLSLNLYLI-LNLSLEVSNECKYIPVLIINEI 332
>AL032622-8|CAA21503.1| 507|Caenorhabditis elegans Y66A7A.8
protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -2
Query: 680 SLVITMIIFLVYLNLMTEVSGACFYLTLFILKNL 579
SL +++ ++L+ LNL EVS C Y+ + I+ +
Sbjct: 300 SLTLSLNLYLI-LNLSLEVSNECKYIPVLIINEI 332
>AL009246-7|CAA15840.2| 347|Caenorhabditis elegans Hypothetical
protein C47F8.8 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 515 FKICTFLTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFP 369
++ CT L DM+ + G + + + VQ Y H+++R+ Y +G P
Sbjct: 304 YENCTELADMEIAIRIGDITLQI-VTVQNTY-----HEMVRLYYQIGMP 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,432
Number of Sequences: 27780
Number of extensions: 361457
Number of successful extensions: 760
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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