Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b12
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    31   0.12 
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    29   0.49 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.64 
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    29   0.85 
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    28   1.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   3.4  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    27   3.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.5  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   6.0  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   6.0  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    26   6.0  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    26   6.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   7.9  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    25   7.9  

>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 234 IVYERSFMLSLRQSPISQTPPQCALPAALLKNPSS 338
           I+ E+S  +  +Q P S  PP+ ALPA  +  PSS
Sbjct: 236 ILREQSKQIPTQQKPSSLPPPERALPAPTMPTPSS 270


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 246 RSFMLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 389
           +S + SL  +P S T  Q    +  L+ PSS   AQ     KP  N I
Sbjct: 217 QSTLFSLNTAPFSATSQQLVHDSVSLRRPSSNIPAQKPIPPKPEQNEI 264


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
 Frame = +3

Query: 81  IMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGTRI--VYERSF 254
           + S+ PI +    +    S++ +   PA  P+   S P  +I  + P  T +   YE+  
Sbjct: 276 VASSKPIKK--AWASVAKSKKKVTPAPAPAPESEPSKP--SIAPSQPSKTNVSAAYEKPA 331

Query: 255 MLSLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 389
            LS    P        A PA +   PS+  +A   ST     N++
Sbjct: 332 ELSSSSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINAV 376


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 379 DRGFCVL-AGCALGTEDGFFSRAAGSAHCGG-VWEIGDCRRDNMNDL 245
           D   C++ AG  +    GF  R   +A C G VW I  CR   +++L
Sbjct: 429 DGPMCLIGAGVGIAPFRGFVQRRLANAACTGKVWIIQGCRDQKLDEL 475


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 261 SLRQSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 389
           S R S   QTPP   LP+ LL    + P+A P    +P+ NS+
Sbjct: 15  SKRSSRKRQTPPMPELPSFLL----AFPHAPPLGFLRPKLNSL 53


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -3

Query: 337 EDGFFSRAAGSAHCGGVWE 281
           ED F+++A+G+ + GG W+
Sbjct: 36  EDNFYAKASGNLYLGGTWK 54


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
 Frame = +3

Query: 63  TPRKFLIMSASPIARQATHSQSIPSRRVLI---TDPAQMPDVYSSTPGGTIYSTTPGGTR 233
           TPRK L  + SP      HS+SI   R        P+ +P +     GG   +     ++
Sbjct: 420 TPRKPLPTTTSPKVNPEPHSESISDTRPSTPRKVPPSTVPKMNPKLQGGNSVTAPSTPSK 479

Query: 234 IVYERSFMLSLR----QSPISQTPPQCALPAALLKNPSSVPNAQPASTQKPRSNSI 389
           ++   S  ++ +    +S  + + P   LPAA  K    +   + AS   P  ++I
Sbjct: 480 VLPAMSPKVAPKFQGGRSSTAPSTPNKVLPAASAKAAPKL-QEKAASFDIPNKSTI 534


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 267 RQSPISQTPPQCALPAALLKNPS-SVPNAQPASTQKPRSNSIS 392
           R+ P +    +CA+   +LKNP+ S+  A   ST +P S  +S
Sbjct: 298 RERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 118 TANRFLQGGS*SRIPLKCLMSIPAHRAEPSTP--PLLEVQE 234
           T N+ + GG     P+     IPA  AEP+ P  P  EV E
Sbjct: 875 TVNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVE 915


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 144 VLITDPAQMPDVYSSTPGGTIYSTTPGGTRIVYERSFMLSLRQSPISQT 290
           VL+TD   +P+V+SS   G +    P  +R + E    +      ISQ+
Sbjct: 109 VLVTDEQDVPEVWSSKSLGKLEGFMPELSRQIVETDRSVMEHVDKISQS 157


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
 Frame = +3

Query: 69   RKFLIMSASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGG---TIYSTTPGG--TR 233
            RK  I S  P   Q    +S+PS++   T   +     S  P     T   + P    T 
Sbjct: 676  RKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESTPSKQPTEGQHTRQESLPSQQTTE 735

Query: 234  IVYERSFMLSLRQSPISQTPPQCALPAALLKNPS-----SVPNAQPASTQKPRSNSISFD 398
              + R   +  +Q    Q   Q +LP+            S+P+ QP+  Q+ R  S+   
Sbjct: 736  TKHLRKESIPSKQPTEGQHARQESLPSQQTTETKHLRKESIPSKQPSGGQQLRQESLPSQ 795

Query: 399  ESQET 413
            +S E+
Sbjct: 796  QSSES 800


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 273 SPISQTPPQCALPAALLKNPSSV 341
           +P     P CALPA  LK P S+
Sbjct: 247 NPYGFMEPDCALPADPLKTPMSI 269


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 96  PIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGTIYSTTPGGT 230
           P + Q   + S  +  V+++  + +    SSTP  TIYS T G T
Sbjct: 108 PSSSQTISASSSTTDNVIVS--SSISSTVSSTPVSTIYSGTSGTT 150


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 276 PISQTPPQCALPAALLKNPSSVPNAQPASTQKP 374
           PI  + P  A PAA +K+P S P+   A    P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 87  SASPIARQATHSQSIPSRRVLITDPAQMPDVYSSTPGGT-IYSTTPGGTRIVYERSF 254
           + SP    + HS+  P      +  A +  ++++TP G   Y +   G  + Y  SF
Sbjct: 256 TVSPTNEPSAHSRPSPQGTTANSSSASISSLHNTTPDGEGKYRSVQNGRALNYVSSF 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,740
Number of Sequences: 5004
Number of extensions: 61068
Number of successful extensions: 189
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)