Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b07
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   5.4  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   5.4  
AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF077536-8|AAT81208.1|  431|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF077536-7|AAT81207.1|  570|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 547  ISMLERFEKNLEASEITPKVGSAAQGLAIHGHASDDAMHYEKSSM 681
            ISML RFE N    EI  K G   + + I G     A  Y K S+
Sbjct: 3666 ISMLSRFEPNF---EIVIKGGQVIRKIYIRGQTGKSAAFYLKKSV 3707


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 547  ISMLERFEKNLEASEITPKVGSAAQGLAIHGHASDDAMHYEKSSM 681
            ISML RFE N    EI  K G   + + I G     A  Y K S+
Sbjct: 3677 ISMLSRFEPNF---EIVIKGGQVIRKIYIRGQTGKSAAFYLKKSV 3718


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 547  ISMLERFEKNLEASEITPKVGSAAQGLAIHGHASDDAMHYEKSSM 681
            ISML RFE N    EI  K G   + + I G     A  Y K S+
Sbjct: 3677 ISMLSRFEPNF---EIVIKGGQVIRKIYIRGQTGKSAAFYLKKSV 3718


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +1

Query: 547  ISMLERFEKNLEASEITPKVGSAAQGLAIHGHASDDAMHYEKSSM 681
            ISML RFE N    EI  K G   + + I G     A  Y K S+
Sbjct: 3677 ISMLSRFEPNF---EIVIKGGQVIRKIYIRGQTGKSAAFYLKKSV 3718


>AF036693-3|AAO61431.1|  544|Caenorhabditis elegans Hypothetical
           protein C49A9.8 protein.
          Length = 544

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
 Frame = +1

Query: 385 SHVSPYPLNLIFISDTIHPP---------PMYDFPFPSADMLKRLPHITASQTNKSIAIS 537
           S++  +  N++FI   + P          P+ DFP P+ D +  +   T     KS+ I 
Sbjct: 243 SNIFSHSRNIVFIFQEVLPEASFIFSNHIPVLDFPSPTFDKIIPIGGFTVKTNEKSLKID 302

Query: 538 KLQISMLERFEKNL 579
           K   ++L   +KN+
Sbjct: 303 KKWDAILNIRKKNV 316


>AF077536-8|AAT81208.1|  431|Caenorhabditis elegans Hypothetical
           protein C16A11.2b protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -2

Query: 240 IQHGLSFNDPFKQHNSSNSICCLRQLSRLWRMFDLFNTIADDTCSKKRCSIRLAEEPISP 61
           I++ +  ND      +SNS   L QL+ + + F++    AD+  +   C +R+A+   + 
Sbjct: 156 IKNRVVSNDQMFTFYNSNSD--LDQLAEIVKFFEVTQARADELRACAECDVRMAQNHENL 213

Query: 60  LLPNSDWN 37
           L  N D N
Sbjct: 214 LRQNRDKN 221


>AF077536-7|AAT81207.1|  570|Caenorhabditis elegans Hypothetical
           protein C16A11.2a protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = -2

Query: 240 IQHGLSFNDPFKQHNSSNSICCLRQLSRLWRMFDLFNTIADDTCSKKRCSIRLAEEPISP 61
           I++ +  ND      +SNS   L QL+ + + F++    AD+  +   C +R+A+   + 
Sbjct: 295 IKNRVVSNDQMFTFYNSNSD--LDQLAEIVKFFEVTQARADELRACAECDVRMAQNHENL 352

Query: 60  LLPNSDWN 37
           L  N D N
Sbjct: 353 LRQNRDKN 360


>Z81116-7|CAB03306.1|  669|Caenorhabditis elegans Hypothetical
           protein T06C12.8 protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 316 WNVHHI--LHIPTFF*NISLEPYSWCRHS 236
           WN H +  L+ PT        P+ WCRH+
Sbjct: 407 WNTHTVQNLYSPTCNYESKDSPFGWCRHT 435


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,048,885
Number of Sequences: 27780
Number of extensions: 311250
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)