Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b06
         (665 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1E568 Cluster: PREDICTED: similar to pol polypr...    35   1.5  
UniRef50_Q4KKD1 Cluster: Fusaric acid resistance domain protein;...    33   8.2  

>UniRef50_UPI0000F1E568 Cluster: PREDICTED: similar to pol
            polyprotein; n=1; Danio rerio|Rep: PREDICTED: similar to
            pol polyprotein - Danio rerio
          Length = 1019

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 248  KPQIYGPLLVQATAPPVPKTVELSPLATYTA*LLFGIQKKNRSAKKII 391
            KP +Y PL+  A  PP P+ V+ SP+  YT   L  ++++ R  + ++
Sbjct: 876  KPVLYSPLVPSAPTPPPPRLVDGSPV--YTVRRLLDVRRRGRGFQYLV 921


>UniRef50_Q4KKD1 Cluster: Fusaric acid resistance domain protein;
           n=10; Pseudomonas|Rep: Fusaric acid resistance domain
           protein - Pseudomonas fluorescens (strain Pf-5 / ATCC
           BAA-477)
          Length = 695

 Score = 32.7 bits (71), Expect = 8.2
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +2

Query: 80  YLICVIVQTWKTVEMFLTYDAITTFGISMVLS-FTLSVIILLIVAAKRGFFRVGASRKPQ 256
           YL+ VI+  W  + +FL+    T    +++L+ +TL +I L +V    G + V  +R  +
Sbjct: 87  YLLVVIIALWTGILLFLSMHLRTANNYALMLAGYTLPLIALPVVDNPLGVWDVAEARTEE 146

Query: 257 IY 262
           I+
Sbjct: 147 IF 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,000,928
Number of Sequences: 1657284
Number of extensions: 12435354
Number of successful extensions: 33669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33493
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)