Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b06
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.80 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   1.1  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    28   1.4  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    25   7.4  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   7.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.8  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 130 DLRRNHHLRDLNGPLIHAVSD 192
           D RR+HH +++ G L+H  SD
Sbjct: 451 DHRRSHHQQNITGDLVHVYSD 471


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 393 VMIFFADLFFFCIPNS-SYAVYVANGDSSTVFGTGGAVACTNNGP*IWGFRLA 238
           VMI F+ LF F    +   A YV  G+S  +       A    G  +WGF ++
Sbjct: 367 VMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTGNWLWGFLIS 419


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 393 VMIFFADLFFFCIPNS-SYAVYVANGDSSTVFGTGGAVACTNNGP*IWGF 247
           VMI F+ LF F    +   A YV  G+S  +       A    G  +WGF
Sbjct: 367 VMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAAVATTGNWLWGF 416


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 488 LNMYFE*FCIFHFDKLSTSPDSNQGKLIIT 399
           +N+Y   FC     +L T P  N  K+IIT
Sbjct: 255 INIYTLPFCSDSIPRLQTLPALNSSKIIIT 284


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 112 NSGNVFDLRRNHHLRDLNGPLIHAVSDNSIDSGSEARILQGWGQSEAPNLRPIIGAG 282
           N+G + +   ++ L DLNG     V    +  G + + +      +AP   PI   G
Sbjct: 639 NAGKIVEQGSHNELLDLNGAYARLVEAQKLSGGEKDQEMVEEELEDAPREIPITSFG 695


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 499 NRDNFTNR*LLLYVLYINPISCKVFFFF 582
           N   F  R LLL++L I   SC V + F
Sbjct: 59  NSSKFRKRFLLLFLLGITGYSCSVVYCF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,265
Number of Sequences: 5004
Number of extensions: 54688
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)