Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b06
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     30   1.7  
U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +1

Query: 169 PLIHAVSDNSIDSGSEARILQGWGQSEAPNLRPIIGAGHSTSCPENSGT 315
           PL+ A S  ++D G   +I+Q    SEAP   PI+    S+ C ENS T
Sbjct: 506 PLMKAKSKYNLDDGKMKQIMQWMETSEAP---PIL---FSSPCYENSAT 548


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +1

Query: 169 PLIHAVSDNSIDSGSEARILQGWGQSEAPNLRPIIGAGHSTSCPENSGT 315
           PL+ A S  ++D G   +I+Q    SEAP   PI+    S+ C ENS T
Sbjct: 506 PLMKAKSKYNLDDGKMKQIMQWMETSEAP---PIL---FSSPCYENSAT 548


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +1

Query: 169 PLIHAVSDNSIDSGSEARILQGWGQSEAPNLRPIIGAGHSTSCPENSGT 315
           PL+ A S  ++D G   +I+Q    SEAP   PI+    S+ C ENS T
Sbjct: 506 PLMKAKSKYNLDDGKMKQIMQWMETSEAP---PIL---FSSPCYENSAT 548


>U28941-8|AAC71105.2|  470|Caenorhabditis elegans Hypothetical
           protein F31D5.2 protein.
          Length = 470

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +2

Query: 47  FFYKHACLCYAYLICVIVQTWKTVEMFLTYDAITTFGISMVLSFTLSVIILLIVAAKRGF 226
           FF+  ACL  A ++ +I   W  V  F TY A     + +  ++  +   LL + A   F
Sbjct: 60  FFFTIACLLIAPVVDLITAKWSMVVGFFTYIAFQLGFLELNSAYLYTTSALLGIGA--AF 117

Query: 227 FRVGASR 247
             VG  +
Sbjct: 118 LWVGQGK 124


>Z81594-7|CAJ55256.1| 4404|Caenorhabditis elegans Hypothetical protein
            ZC247.1 protein.
          Length = 4404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 354  PNSSYAVYVANGDSSTVFGTGGAVACTN-NG 265
            P +  A Y+ NG+SST     GA  C N NG
Sbjct: 4256 PKTERASYLTNGESSTQTQRNGAANCHNGNG 4286


>Z80221-3|CAB02312.2| 4404|Caenorhabditis elegans Hypothetical protein
            ZC247.1 protein.
          Length = 4404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 354  PNSSYAVYVANGDSSTVFGTGGAVACTN-NG 265
            P +  A Y+ NG+SST     GA  C N NG
Sbjct: 4256 PKTERASYLTNGESSTQTQRNGAANCHNGNG 4286


>AL032619-1|CAJ55259.1| 4404|Caenorhabditis elegans Hypothetical
            protein ZC247.1 protein.
          Length = 4404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 354  PNSSYAVYVANGDSSTVFGTGGAVACTN-NG 265
            P +  A Y+ NG+SST     GA  C N NG
Sbjct: 4256 PKTERASYLTNGESSTQTQRNGAANCHNGNG 4286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,466,652
Number of Sequences: 27780
Number of extensions: 302274
Number of successful extensions: 796
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)