Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11b04
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 51 6e-07
AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical ... 45 5e-05
AF022975-5|AAB70672.1| 292|Caenorhabditis elegans Serpentine re... 35 0.042
U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical pr... 31 0.91
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 30 1.2
AF022975-6|AAB70671.2| 293|Caenorhabditis elegans Serpentine re... 29 2.1
Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 28 4.8
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin... 28 4.8
U80024-3|AAK18893.1| 342|Caenorhabditis elegans Seven tm recept... 28 6.4
AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical... 28 6.4
AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein. 28 6.4
AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine re... 28 6.4
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 27 8.4
U64848-7|ABS83846.1| 144|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF039048-12|AAB94241.2| 296|Caenorhabditis elegans Hypothetical... 27 8.4
>Z68119-7|CAA92193.2| 360|Caenorhabditis elegans Hypothetical
protein T18D3.3 protein.
Length = 360
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Frame = +1
Query: 439 EKRNGSISEAERHCH----RSRNEEIDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAI 606
E R +++ HCH + + + ++RA R L + VLC+ FM+ E++GG L+ SLAI
Sbjct: 21 EGRKTTVTYDNFHCHDEADSTDSHDSNRRATRILWLTVVLCLFFMVCEVIGGVLAGSLAI 80
Query: 607 ATDAAHLLT 633
TDAAHLLT
Sbjct: 81 VTDAAHLLT 89
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 51.2 bits (117), Expect = 6e-07
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +1
Query: 271 RDMVSGQLNINGYNDGHVSYGTDNQIRGRRVIFCVHGNP---STGCCAVIETSADGDDSE 441
RD S L N D +D+ + + HG+ S G T + D S
Sbjct: 18 RDSSSSNLPANIEEDTQSVSSSDSGVSADSIDHHHHGHGHGHSHGGHGHSHTHNNDDSSS 77
Query: 442 KRNGSISEAERHCHRSRNEEIDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAA 621
+G+ A +H H + ++ +RA + L + L +F+ E VGG+ + SLAI TDA
Sbjct: 78 DCSGAGGGAHKHSHDEKYQK-GRRAEKVLWAVAALSAVFIAAEFVGGFWAQSLAIMTDAG 136
Query: 622 HLLT 633
H+L+
Sbjct: 137 HMLS 140
>AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical
protein Y39E4A.2a protein.
Length = 391
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 487 SRNEEIDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLLT 633
S E+ +RA + L + L +F+ E VGG+ + SLAI TDA H+L+
Sbjct: 73 SSREDTGRRAEKVLWAVAALSAVFIAAEFVGGFWAQSLAIMTDAGHMLS 121
>AF022975-5|AAB70672.1| 292|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 13 protein.
Length = 292
Score = 35.1 bits (77), Expect = 0.042
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -2
Query: 290 CPLTISLFPTRQPGVSDLSVMYWTSTSSNI-AARSAFVLFNLSLDKLFDLYLPLNGTKFL 114
C + SLFP P + L + Y + +SNI A RS +LF +S++++ +Y P+ KF
Sbjct: 60 CGIFYSLFPEPLPLLQTL-IFYLSLPASNIYAVRSILILF-ISVERVIAVYFPIFFYKFH 117
Query: 113 SVNAFNVFIFVSL*Y 69
+ V I V++ Y
Sbjct: 118 TFCPRFVIIIVAIIY 132
>U97403-6|AAB52471.2| 583|Caenorhabditis elegans Hypothetical
protein T10E9.3 protein.
Length = 583
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +1
Query: 109 TDKNLVPLSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSETPGCLVGNRDMVSG 288
T+ + PL Y + D L N +A VE ++ D+++ GC +++G
Sbjct: 264 TEGKMQPLEVEYEGIEVKKD-LAIVNNGKANFDVSVEKKFFLDRADEQGCFTMQVAILAG 322
Query: 289 QLNINGYN 312
Q N +N
Sbjct: 323 QYQANNFN 330
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 495 RRDRQESEKETHRGQRAVRHIHDRGNSRRVLVQQLSDSDRRRA 623
R+DR++ E+E R +R R DR SR+ + D DR R+
Sbjct: 344 RKDREDRERERSRKEREDRSRKDRERSRQDREDRDRDRDRDRS 386
>AF022975-6|AAB70671.2| 293|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 12 protein.
Length = 293
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = -2
Query: 293 SCPLTISLFPTRQPGVSDLSVMYWTSTSSNIAARSAFVLFNLSLDKLFDLYLPL 132
SC ++ S+FP + +L + Y + +SN +A + V +S++++ Y P+
Sbjct: 59 SCGISYSMFPEQFSQTQNL-IFYLSLPASNFSAIRSIVALFISVERVVAAYFPI 111
>Z82268-4|CAB05199.1| 741|Caenorhabditis elegans Hypothetical
protein F52B11.3 protein.
Length = 741
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 288 SADHISISDETARCLRLVCYVLDLDIFQYSRTISVCFIQLITRQ 157
SA ++ISD C+ L L+ Y RT S CFI + RQ
Sbjct: 326 SAQGVTISD----CISLCFQNLNCKSINYDRTASSCFIYAVGRQ 365
>Z96102-6|CAJ85756.1| 1062|Caenorhabditis elegans Hypothetical protein
H39E23.1c protein.
Length = 1062
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 996 GCDYEQRERYMILCVHGDPNT 1016
>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical protein
H39E23.1b protein.
Length = 1096
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 1030 GCDYEQRERYMILCVHGDPNT 1050
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical protein
H39E23.1a protein.
Length = 1192
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 1126 GCDYEQRERYMILCVHGDPNT 1146
>Z81027-7|CAJ85745.1| 1062|Caenorhabditis elegans Hypothetical protein
H39E23.1c protein.
Length = 1062
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 996 GCDYEQRERYMILCVHGDPNT 1016
>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical protein
H39E23.1b protein.
Length = 1096
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 1030 GCDYEQRERYMILCVHGDPNT 1050
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical protein
H39E23.1a protein.
Length = 1192
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 1126 GCDYEQRERYMILCVHGDPNT 1146
>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1096
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 331 GTDNQIRGRRVIFCVHGNPST 393
G D + R R +I CVHG+P+T
Sbjct: 1030 GCDYEQRERYMILCVHGDPNT 1050
>U80024-3|AAK18893.1| 342|Caenorhabditis elegans Seven tm receptor
protein 190 protein.
Length = 342
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 529 IVASVLCVIFMIGEIVGGYLSNSLAIATDAAHLL 630
+V+S L +F+ G + LSN+L+I +DAA+ L
Sbjct: 204 MVSSSLMCVFIFGVLCYKRLSNTLSIVSDAANNL 237
>AL032637-11|CAA21622.3| 1119|Caenorhabditis elegans Hypothetical
protein Y43F8C.12 protein.
Length = 1119
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 380 PWTQNMTLRPRI*LSVPYD 324
PW QNMTLR I P+D
Sbjct: 696 PWIQNMTLRDNITFGRPFD 714
>AF400666-1|AAL28025.1| 481|Caenorhabditis elegans CUX-7 protein.
Length = 481
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 483 QIAKRRDRQESEKETHRGQRAVRHIHDRGNSRRVLVQQLSDSDRRR 620
QIAKR + + + ET R ++ ++ R + Q+L D DRRR
Sbjct: 270 QIAKRAEERR-QIETERLRQEEEELNIRRQEELKVKQELDDKDRRR 314
>AC006675-3|AAK84550.1| 335|Caenorhabditis elegans Serpentine
receptor, class h protein35 protein.
Length = 335
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 242 DLSVMYWTSTS-SNIAARSAFVLFNLSLDKLFDLY 141
D + +Y+ + S N+A SA +LF L K+F++Y
Sbjct: 92 DPATLYFMNFSVENVACTSALILFTSRLFKIFNMY 126
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
F01G4.3 protein.
Length = 1266
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 55 LINEKYHNDTKINTLNAFTDKNLVPLSGR 141
L++E+YHN K+ F ++ +V L GR
Sbjct: 1070 LLSEEYHNRLKVLEALNFVEQKMVSLKGR 1098
>U64848-7|ABS83846.1| 144|Caenorhabditis elegans Hypothetical
protein C50E3.11 protein.
Length = 144
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 377 WTQNMTLRPRI*LSVPYDTCPSLYPFIFSCPLTISLFPTRQPGVSD 240
W M L P + S D P +Y F F C L I L P + + D
Sbjct: 55 WVHRMELEPTV--SHWLDRKPLMYDFQFPCILQICLVPNAKKKLID 98
>AF039048-12|AAB94241.2| 296|Caenorhabditis elegans Hypothetical
protein F16B4.10 protein.
Length = 296
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 236 SVMYWTSTS-SNIAARSAFVLFNLSLDKLFDLYLPL 132
S ++W SNI+A F++ + +D+L YLP+
Sbjct: 76 SDLFWLGLPFSNISAARTFIVLIIVMDRLLATYLPI 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.132 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,861
Number of Sequences: 27780
Number of extensions: 266811
Number of successful extensions: 1038
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -