Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b03
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   273   1e-75
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  273 bits (669), Expect = 1e-75
 Identities = 136/151 (90%), Positives = 141/151 (93%)
 Frame = +2

Query: 86  ENNPIYGPFFGVMGAASAIIFXALGAAYGTAKSXTGIAAMSVMRPXLIMKSIIPVVMAGI 265
           E++PIY PFFGVMGAASAIIF ALGAAYGTAKS TGIAAMSVMRP LIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 266 IAIYGLVVXVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAISIVGDAGVRGTA 445
           IAIYGLVV VLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAI IVGDAGVRGTA
Sbjct: 64  IAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 123

Query: 446 QQPRLFVGMILILIFAEVLGLYGLIVAIYLY 538
           QQPRLFVGMILILIFAEVLGLYGLIVAIYLY
Sbjct: 124 QQPRLFVGMILILIFAEVLGLYGLIVAIYLY 154


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 301 NQDXHDQTVDGNNTRHDDRNDRLHDQXRPHHRH 203
           NQ  H    D  N  ++  ND+ H   + ++RH
Sbjct: 430 NQARHSSKSDNQN--NNQHNDQAHHSSKSNNRH 460


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = -3

Query: 541 CVQVDGDDKSVKTQYFSENKNKNHSDE*PRLLSSTTHACISHDAYGETGSQTRESYSQTS 362
           C+  D   +S+ TQ+    +++ HSD     L S  +A I +  + E+ ++       T 
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSDSCCLCLDS-MNAVIRN--FNESENRRNSCLGSTE 384

Query: 361 TQVDEPFVKGVVGWLLEGTSN 299
           T   +   +    ++ E +SN
Sbjct: 385 TYYSKHNTQQFTQYIPESSSN 405


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 84  LKIIQSTDPSLELWGRRLLSSS 149
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 458 LFVGMI-LILIFAEVLGLYGLIVAIY 532
           L VG + LILIF  V G   + VAIY
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIY 51


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 251 VMAGIIAIYGLVVXVLIAGALQEPANY 331
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 139 YHLXRLGSCLWNCQVXNWYCRHV 207
           YH  R    +  CQ  N +C H+
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 139 YHLXRLGSCLWNCQVXNWYCRHV 207
           YH  R    +  CQ  N +C H+
Sbjct: 24  YHPYRQPDGMNQCQAVNGHCSHL 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,157
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)