Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b01
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   118   6e-28
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    28   1.1  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    28   1.4  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   4.2  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.6  
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    25   7.4  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.4  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    25   9.8  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   9.8  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   9.8  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  118 bits (285), Expect = 6e-28
 Identities = 72/195 (36%), Positives = 106/195 (54%), Gaps = 2/195 (1%)
 Frame = +2

Query: 71  VNKGIFIVAAKRTPFGKMGGLLKDIHPSDLLAVAAKESFKAGNVAPALVDTVNIGQVYSL 250
           VN  ++IV+A RTP G  GG    +  + L ++A K + +  N+ P+ VD V +G V S 
Sbjct: 2   VNTEVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVS- 60

Query: 251 SGTSDGGLSP-RHAALKSGVPQEKPALGVNRLCGSGFQAVINSAQDILTGTAQISLAGGT 427
              ++ G +P R  AL +G+P+      VN++C SG +A I  AQ I+TG A+I +AGGT
Sbjct: 61  ---ANLGQNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGT 117

Query: 428 ENMSAVPFVVRNTRFGVPLGVNIPFEDSLSAGSL-DTYCNYTMPQTAENLAEKYELKRGE 604
           E+MS  P+     RFG   G N+   D L    L D Y    M   AE  AE++ + R  
Sbjct: 118 ESMSNAPYYAPKNRFGAKYG-NVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHSIDRAS 176

Query: 605 VDQFSLQSQQRWKTA 649
            D F++ S +R + A
Sbjct: 177 QDAFAISSYKRAQNA 191


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 378 ALLMTAWNPDPHNLLTPSAGFSC 310
           ++   +W+PD    +T SAG+SC
Sbjct: 233 SIFSISWSPDSSQFVTSSAGYSC 255


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 353 GFQAVINSAQDILTGTAQISLAGG-TEN-MSAVPFVVRNTRFGVPL 484
           GF AV  SA    +GT  + +A   TEN   A P  VR T F + +
Sbjct: 271 GFCAVFTSAAFSFSGTEYVGVAAAETENPAKAFPVAVRQTLFRIAI 316


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 480 LWA*IFPSKIPSQRDLWTHTATTLCLKLLKIWLRNTNSKGE 602
           +WA  +P     +  ++    T  CL+LL  ++R TN   E
Sbjct: 191 IWAFDWPMMNLQETFIYWDRCTNACLRLLLCYIRYTNKSSE 231


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 152 SDLLAVAAKESFKAGNVAPALVDTVNIGQVYSLSGTSDGGLSPRHAALKSGVPQEKPALG 331
           +D L  A + S K GN    +  T       S +  S G L+P    ++   P+++P   
Sbjct: 242 NDYLLAAQRRSNKRGNARKHIDLTARESPSTSFAQMSKGALNPDPEVIE---PEDEPTTF 298

Query: 332 VN---RLCGSGFQAVINSAQDI 388
            N    L  +G  +V++S +D+
Sbjct: 299 RNPLEALLSTGQYSVVSSDEDV 320


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 495 FPSKIPSQRDLWTHTATTLCLKLLKIWLRNTNSK 596
           FP KIPS+ DL T     L  +  K+  +N ++K
Sbjct: 218 FPKKIPSKEDLETREVLLLPPQTSKLSNKNLDTK 251


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 134 LKDIHPSDLLAVAAKESFKAGNVAPALVDTVNIGQVYSLS 253
           ++DI  ++   V  + SF+ G++  ALV ++  G  Y L+
Sbjct: 95  VQDIRATEKNKVKVQNSFRPGDIVRALVISLGDGSSYFLT 134


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 212  LVDTVNIGQVYSLSGTSDGGLSPRHAALKSGVPQEKPALGVNRLCGSGFQAVINS 376
            ++++++   + SL GTS G   PRHA      P+        R+    F ++++S
Sbjct: 1158 ILESLHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSS 1212


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 485 GVNIPFEDSLSAGSLDTYCNYTMPQTAENLAEKYELKRGEVDQFSLQSQQRWKTAHDSG 661
           G N   E + ++G  D   N    +  E   EKY+ K  E  Q   + +Q  KT  D G
Sbjct: 446 GANGEMEVTFTSG-FDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDEG 503


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 260 SDGGLSPRHAALKSG-VPQEKPALGVNRLCGSGFQAVINSAQDIL 391
           S+    P   A  +G VPQ  P      L G  +  V NSAQ +L
Sbjct: 326 SNAQFRPSLPATPNGSVPQSNPLYDTTGLNGGQYPVVQNSAQPLL 370


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 560 TAENLAEKYELKRGEVDQFSLQSQQ 634
           TA  L E+ E K+GE+D F  +S++
Sbjct: 25  TAFYLTEEQEYKKGELDIFIFESKE 49


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 385 YFNRYGSDFLSRWHGE 432
           +F R GSD LS+W GE
Sbjct: 439 FFLRKGSDCLSKWVGE 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,310
Number of Sequences: 5004
Number of extensions: 63734
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)