Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11b01
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   4.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 191 AGNVAPALVDTVNIGQVY 244
           AGN  P L+ T N+G ++
Sbjct: 2   AGNSVPVLLVTANVGSIF 19


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 386 ILTGTAQISLAGGTENMSAVPFVVRNTRFGVPLGVNIP 499
           +L GTA I L   T     VP   +   FG    VN P
Sbjct: 530 VLVGTAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCP 567


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 386 ILTGTAQISLAGGTENMSAVPFVVRNTRFGVPLGVNIP 499
           +L GTA I L   T     VP   +   FG    VN P
Sbjct: 530 VLVGTAGIILQAPTLYDDRVPIDKKFNEFGTTAVVNCP 567


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 247 AKRNIRRWFITPSRSPEIR 303
           AK   RRW  T SR  E+R
Sbjct: 449 AKEKFRRWVSTMSRPFEVR 467


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 151 WMNVFQQTPHFSERGPL 101
           W+++ +Q P F   GPL
Sbjct: 135 WISIQEQIPRFRHIGPL 151


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 151 WMNVFQQTPHFSERGPL 101
           W+++ +Q P F   GPL
Sbjct: 376 WISIQEQIPRFRHIGPL 392


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 528 RDPAERESSKGIFTPRGTP 472
           ++  ERE+S  +F PR  P
Sbjct: 79  QESGEREASVSLFCPRAKP 97


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 ESFKAGNVAPALVDTVNIGQ 238
           +SFK   + P  VD+V IG+
Sbjct: 60  KSFKILPIEPLAVDSVKIGE 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,097
Number of Sequences: 438
Number of extensions: 4782
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)