Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a16
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    27   2.3  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.3  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    27   2.3  
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    25   7.1  

>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 348 HLYHLITRIH*YNGFISTQPKFASLICGHSKRGYEVRTQS 229
           H++H  T+ H Y G+   Q +     CG+ KR  + +T++
Sbjct: 312 HIFHPNTQNH-YGGYCMNQAEETFASCGYLKRYQKTKTKT 350


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 230 LCVLTSYPRLEWPQ-IRLANLG 292
           +CV+T  P ++WP  + LAN+G
Sbjct: 140 ICVITFVPHIQWPSWLVLANVG 161


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 346 MSKLPLVITFIGSDNCNTGHILSLESQIEPFLKDLE 453
           ++KL    +F+ S   N    L+  SQ+E F KDL+
Sbjct: 479 LNKLESTFSFVESRRMNVDFTLNDTSQVEAFEKDLD 514


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 423 SD*TVLEGLGGGSCRCTLNQTSETKIFLINYSYKHV 530
           +D + + GLG G+ R   NQT       + Y Y+H+
Sbjct: 19  ADGSKIPGLGLGTWRSEPNQTKNAVKTALQYGYRHI 54


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 444 GLGGGSCRCTLNQTSETKIFLINYSYKHVFKIYQG 548
           G+ G +C C ++Q       +   + KHVF I +G
Sbjct: 39  GVTGKNCACVISQKKVPDKLIDASTVKHVFPITKG 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,301
Number of Sequences: 5004
Number of extensions: 58403
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)