Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a16
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75526-6|CAD21698.1|  145|Caenorhabditis elegans Hypothetical pr...    41   9e-04
U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like ...    29   2.1  
AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to SU...    29   2.1  
AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical...    28   6.6  
Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016657-7|AAB93660.1|  164|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z75526-6|CAD21698.1|  145|Caenorhabditis elegans Hypothetical
           protein C06H2.6 protein.
          Length = 145

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +1

Query: 109 DLRKYLNHLLEKVNGLHCILITDRDGVPLVR-AVTERAPPLALRPNFISTFGMATDQASK 285
           ++++ L  L+    G+  I ITD DG  ++   +         R   I +      Q  K
Sbjct: 2   NVQQELEELMLTYEGVCAIFITDHDGGLILNIGLPSTLDNSRFRQQLIVSHVTTIPQIHK 61

Query: 286 LGLGRNKTIISMYSSYQVVQMSKLPLVITFIGSDNCNTGHILSLESQIEP 435
           L +G ++T  ++Y S+Q+   S            N NTG +LSL  ++ P
Sbjct: 62  LDMGGHQTTFALYESHQIAVHSIDKYYFIVHAGTNTNTGAMLSLREKLFP 111


>U23412-4|AAK21468.3|  697|Caenorhabditis elegans Ubiquitin-like
           protease protein 1 protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +1

Query: 97  NMVDDLRKYLNHLLEKVNGLHCILITDRDGVPLVRAVTERAPPLALRPNFISTFGMATDQ 276
           N + DL+K  NHL  +   L  ++ + +     +  + E+ P    R +       A ++
Sbjct: 281 NTIIDLKKIKNHLSSRDRLLQGVVASGQYEAKAISGIVEKKPKKMQRTSSTDILARAKNK 340

Query: 277 ASKLGLGRNKT 309
            ++LG  R+ T
Sbjct: 341 IAELGGSRSNT 351


>AB095020-1|BAC22612.1|  697|Caenorhabditis elegans similar to
           SUMO-1-specific protease protein.
          Length = 697

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +1

Query: 97  NMVDDLRKYLNHLLEKVNGLHCILITDRDGVPLVRAVTERAPPLALRPNFISTFGMATDQ 276
           N + DL+K  NHL  +   L  ++ + +     +  + E+ P    R +       A ++
Sbjct: 281 NTIIDLKKIKNHLSSRDRLLQGVVASGQYEAKAISGIVEKKPKKMQRTSSTDILARAKNK 340

Query: 277 ASKLGLGRNKT 309
            ++LG  R+ T
Sbjct: 341 IAELGGSRSNT 351


>AC087081-12|AAK66039.2|  324|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.17 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 102 HIFYSEKSF-LVLEIWKASKY*IVKKIRFVYIFL 4
           H  Y+ K+  L+L+ WKA K+  VKK+ F  + L
Sbjct: 141 HKCYTNKNLKLLLKTWKAKKWNHVKKLEFSRVHL 174


>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 361 LVITFIGSDNCNTGHILSLESQIEPFLKDLEV-VVADAP*IKQAKPKYFS 507
           L  TF  SDN   G    +  +I+ FL+ + V  V   P IK  K +YF+
Sbjct: 108 LTATFYDSDNDGVGDFAGISQKID-FLRKIGVTTVYPTPVIKIHKDEYFN 156


>AF016657-7|AAB93660.1|  164|Caenorhabditis elegans Hypothetical
           protein C16C4.16 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 477 NQTSETKIFLINYSYKHVFKIYQG 548
           N+    KIFL+N++ KH+  I +G
Sbjct: 9   NRDENQKIFLLNHTVKHISSIKEG 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,921
Number of Sequences: 27780
Number of extensions: 321449
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)