Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a15
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    30   0.17 
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    27   0.90 
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    27   0.90 
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   2.7  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    25   3.6  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   4.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   4.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   4.8  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   6.3  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   6.3  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    24   8.4  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    24   8.4  

>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 76  NVLKFKPPMVFTTQDADRLVETLDRVLGEL 165
           N+++F PP+V T +D  + +E + + L +L
Sbjct: 395 NIIRFSPPLVITEEDLMKGIEVIKKSLNDL 424


>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
           Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +1

Query: 76  NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIK 252
           NV K    ++ T+Q   R+ ETLD  L + D+T    I +E   TPI T  P  ++ I+
Sbjct: 50  NVRKTYCGLIVTSQ---RVSETLDEALKQEDETERQKILME---TPIFTVGPATDDSIR 102


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 0.90
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 133 VETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIKSSVQKAIKT**MFYYCNSIN 312
           V T+  +L  L D+RI   KLE L T + +    ++  +K+  +  +K     + C   N
Sbjct: 162 VTTIPALLRALQDSRIDREKLEALATFLASASIDEKVYVKNCKKDLLKNFVFEHSCRKAN 221

Query: 313 KL 318
           +L
Sbjct: 222 EL 223


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
 Frame = +1

Query: 109 TTQDADR--LVETLDRVLGELDD-TRISNIKLEVLVTPI 216
           T +D +R  LV+ +DR+L +LDD  R    K+ V++ P+
Sbjct: 427 TLEDQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPL 465


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 61  DGPDSNVLKFKPPMVFTTQDADRLVETLDRVL 156
           DG   + +   PP + T +  D LVE L + +
Sbjct: 420 DGTRGDHVLLAPPYIITREQIDELVEALSKTI 451


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 209 VTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLIN 48
           VTS    I   L      K +  +S +L A C +N +G +   T     SR++N
Sbjct: 370 VTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQVVTF----SRIVN 419


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 76  NVLKFKPPMVFTTQDADRLVETLDRVLGEL 165
           NV+  K P V T  + +  +ETL  VLGE+
Sbjct: 327 NVVDGKIPEVSTAANPEVCLETLKAVLGEI 356


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 206  TSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLS-GPSRLINIFSSLI 30
            +ST++L  +  V+SNS  +L+  STS   S    T    +   L S GPS  + + SSL 
Sbjct: 828  SSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTDSVTSTTALTSQGPSSSV-VSSSLS 886

Query: 29   LLTTCFASV 3
              T+   S+
Sbjct: 887  STTSLSTSI 895


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 287 CFITAIVL---INLKTVNTDRIMN*LLHVVVIY 376
           C +T +++   +N+ T  TD+++  LLH   I+
Sbjct: 53  CILTRLIIGPSLNVFTFPTDQVLKSLLHAATIF 85


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 266 FCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSP 156
           F   +L +   FG SVL+ + S++N+    ++ S SP
Sbjct: 3   FILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSP 39


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 31  MREENILISR-DGPDSNVLKFKPPM 102
           MR+   LI R  GP +NVLK K P+
Sbjct: 1   MRDLRKLIPRLRGPGTNVLKMKKPL 25


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 269 AFCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSL 126
           AF T +    SF    + + +T    L+F    SS+SP+ ++    SL
Sbjct: 413 AFVTVITSLVSFLNPWLRLDMTLGMELLFQECKSSSSPELINLCDPSL 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,934
Number of Sequences: 5004
Number of extensions: 30625
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)