Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11a15
(421 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383... 47 7e-06
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 46 9e-06
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 41 4e-04
10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251 29 2.0
12_02_0749 - 22758317-22760407 28 2.7
11_05_0068 - 18782658-18782984,18784634-18784783,18784853-187857... 27 8.1
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 27 8.1
02_01_0095 - 679597-679671,679775-679890,682241-682319,682446-68... 27 8.1
>03_01_0509 +
3836284-3836547,3836927-3837157,3837253-3837423,
3838379-3838522,3838640-3838819,3838926-3839151,
3839326-3839439,3839541-3839627,3839711-3839754
Length = 486
Score = 46.8 bits (106), Expect = 7e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +1
Query: 7 EAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGEL 165
E + ++++ NIL+ + G NV + KPPM FT DAD LV+ +D + L
Sbjct: 434 ETNLLFEKLKDLNILVGKGGLHGNVFRIKPPMCFTRDDADYLVDAMDYAMSGL 486
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +1
Query: 7 EAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGEL 165
E HV+N M++ +L+ + G NV + PP+ FT +D+D +E +D L +L
Sbjct: 432 EIGHVMNHMKDMGVLVGKGGFYGNVFRVTPPLCFTKEDSDFFIEAMDISLSKL 484
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 7 EAKHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGEL 165
E + M+E +L+ + G NV + PP+ FT +DAD V +D L +L
Sbjct: 410 EICRAMEHMKEMGVLVGKGGFYGNVFRITPPLCFTKEDADFFVAVMDSALSKL 462
>10_01_0222 - 2387703-2387744,2387797-2388119,2388170-2388251
Length = 148
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 58 RDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKK 237
++ DSN++ PP + + D V RV+G +DD ++ E+ V + E+ +
Sbjct: 61 KEKKDSNIIPSLPPTIKSDNDEYNYVMIRLRVIGFIDDPNSILVRTELGVFMFDIELNEY 120
Query: 238 ENV 246
E +
Sbjct: 121 EQL 123
>12_02_0749 - 22758317-22760407
Length = 696
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = -3
Query: 263 CTELLMTFSFFGTSVLIGVTSTS---NLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGG 93
C + G VL G+ S+ N++ D V + + + + + +
Sbjct: 411 CKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDKGFLPNL-- 468
Query: 92 LNFNTLLSGPSRLINIFSSLILL 24
+ FNTL+SG S+L N+ ++ ++L
Sbjct: 469 VTFNTLISGYSKLGNVHNAKVVL 491
>11_05_0068 -
18782658-18782984,18784634-18784783,18784853-18785716,
18785877-18786005,18786112-18786188,18786507-18786607,
18786772-18786896
Length = 590
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 52 ISRDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNI 189
+ + P +N + P+ TQ ++ E +DR+LG L T +I
Sbjct: 48 MEEEEPSNNRRRRLRPISEATQIGKKIKEGIDRILGRLKSTNFVSI 93
>08_02_1034 + 23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 26.6 bits (56), Expect = 8.1
Identities = 22/96 (22%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Frame = +1
Query: 19 VVNRMREENILIS----RDGPDSNVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISN 186
+V + ++N+ ++ +D +++L+F+ + R+ ++ D + ++T ++N
Sbjct: 1114 LVQQTSDQNVSVANVDNKDTQSNDILRFEQLRRELIELEKRVQKSADNA--QKEETYVAN 1171
Query: 187 IKLEVLVTPINTEVP-----KKENVIKSSVQKAIKT 279
L+ V+ +P KKENVI SV+K +T
Sbjct: 1172 ETLDSSVSSSPVSMPSGPASKKENVITKSVEKVKET 1207
>02_01_0095 -
679597-679671,679775-679890,682241-682319,682446-682539,
682638-682716,682846-682933,683023-683106,683351-683398,
684044-684118,684274-684315,684347-684416,684551-684589,
685118-685191,686936-687028,687203-687300,688170-688236
Length = 406
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 76 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIK 192
N++ PP++ T ++ D+LV L + + R++ +K
Sbjct: 365 NLIAMSPPLIITREEIDKLVSIYGEAL-KATEERVAELK 402
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,605
Number of Sequences: 37544
Number of extensions: 170786
Number of successful extensions: 386
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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