Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a15
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.8  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    21   4.3  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    21   4.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   9.9  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 11  QNMLSIE*EKKIY*LVVTGPTVTY*SLSPPWCL 109
           ++ +S++ +     +V    T TY +L P WCL
Sbjct: 457 ESPMSVQVDPMAASVVAAALTGTYPTLLPQWCL 489


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 269 AFCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTM 99
           AFC  +L++     TS+ +   S  +++  I    +S  + + VS  L A  +VN +
Sbjct: 12  AFCVAMLVSDVSAKTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVNIL 68


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 269 AFCTELLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTM 99
           AFC  +L++     TS+ +   S  +++  I    +S  + + VS  L A  +VN +
Sbjct: 12  AFCVAMLVSDVSAKTSISVKGESNVDVVSQINSLVSSIVSGANVSAVLLAQTLVNIL 68


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 385 GIQLNIFLDKK 417
           G ++NIFLDKK
Sbjct: 194 GEEVNIFLDKK 204


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 333 VFTVFKFINTIAVI 292
           +FT+F  I TIAV+
Sbjct: 533 IFTLFTIIATIAVL 546


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 78  VTVGPVTTNQYIFFSHSI 25
           + +GP+  N  I + HS+
Sbjct: 251 LALGPIRNNDRILYFHSL 268


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 373 NYNNM*QLIHYSIS 332
           NYNN  + +HY+I+
Sbjct: 326 NYNNNYKPLHYNIN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,429
Number of Sequences: 438
Number of extensions: 2548
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)