Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a14
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796...    29   1.5  
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392     28   4.7  
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138           28   4.7  
01_01_0051 + 389051-389623                                             24   6.0  
08_02_0491 + 17749763-17750143,17750694-17750751,17750846-177508...    27   8.2  
06_01_0045 + 420300-420530,422730-423006,423974-424014                 27   8.2  
03_04_0006 + 16257288-16259522                                         27   8.2  

>03_02_0763 -
           10977793-10978092,10978896-10978996,10979580-10979648,
           10979787-10979857,10979946-10980100,10980348-10980477,
           10980946-10981013,10981335-10981592
          Length = 383

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 179 SWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWW 280
           SW+  C   +   P +   +++ND    WHG+WW
Sbjct: 213 SWNPHCRYLDGIGPKENNSNAQND----WHGAWW 242


>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
          Length = 313

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 167 GTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWA 283
           G RK  STF   +  RR      S  N  SSS   SWW+
Sbjct: 162 GPRKPESTFPFGNMLRRSQKA-ESCSNSNSSSTSSSWWS 199


>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
          Length = 244

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 455 WTHFTRQHVHHSTNFMFHT 399
           W HFT QH   ST F ++T
Sbjct: 86  WKHFTTQHKWPSTEFKYYT 104


>01_01_0051 + 389051-389623
          Length = 190

 Score = 24.2 bits (50), Expect(2) = 6.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 236 SSRNDGSSSWHGSWWARTGSS 298
           SS +  SSS   SWW R+  S
Sbjct: 168 SSTSSSSSSSGSSWWTRSARS 188



 Score = 21.8 bits (44), Expect(2) = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 158 TTHGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSS 262
           ++HGT  S S+  SSS++    +   SS +  S S
Sbjct: 94  SSHGTDTSSSSESSSSSSSSSSESSSSSSSSSSES 128


>08_02_0491 +
           17749763-17750143,17750694-17750751,17750846-17750891,
           17750932-17750998,17751100-17751108
          Length = 186

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 185 TTISWCHVLLRWPAYSSGRTLK 120
           TT+ WC  +  WP    G T++
Sbjct: 12  TTVQWCGCMASWPRRDHGATVR 33


>06_01_0045 + 420300-420530,422730-423006,423974-424014
          Length = 182

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 188 LTTISWCHVLLRWPAYSSGRTL 123
           LT   WC+  +RW A+ +G TL
Sbjct: 125 LTPWRWCNQAVRWLAWKTGTTL 146


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +2

Query: 161 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWH 268
           T      WST  ++  A       P +  DG  SWH
Sbjct: 697 TDDPNAQWSTLVTTKEAAAYRPACPYAHPDGGDSWH 732


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,634,283
Number of Sequences: 37544
Number of extensions: 188910
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)