Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11a14
(491 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 0.41
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 33 0.71
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 33 0.71
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 33 0.71
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 33 0.71
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 33 0.71
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 33 0.71
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 33 0.71
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 33 0.71
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 33 0.71
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 33 0.71
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 33 0.71
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 33 0.71
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 33 0.71
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 33 0.71
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 33 0.71
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 33 0.71
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 33 0.71
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 33 0.71
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 33 0.71
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 33 0.71
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 33 0.71
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 33 0.71
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 33 0.71
BC012317-1|AAH12317.1| 137|Homo sapiens LINCR protein protein. 31 2.9
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 2.9
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 2.9
X74614-1|CAA52685.1| 250|Homo sapiens outer dense fiber protein... 29 6.6
BC104457-1|AAI04458.1| 250|Homo sapiens outer dense fiber of sp... 29 6.6
BC104456-1|AAI04457.1| 250|Homo sapiens outer dense fiber of sp... 29 6.6
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 0.41
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 173 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 277
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 110 RGVGGPSQQVMTPQGRGTVAA 130
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 125 RGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 125 RGVGGPSQQVMTPQGRGTVAA 145
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 32.7 bits (71), Expect = 0.71
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 135 RGVGGPSQQHMAPGNRGQLSA 197
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC012317-1|AAH12317.1| 137|Homo sapiens LINCR protein protein.
Length = 137
Score = 30.7 bits (66), Expect = 2.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 2 RTTSTRRRIASCSLTG--SYGRAWKCSCC 82
RT + R ASCS +G ++ W+C CC
Sbjct: 18 RTGAPRSTTASCSASGRCAWASVWRCECC 46
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 161 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 310
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.7 bits (66), Expect = 2.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 161 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 310
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>X74614-1|CAA52685.1| 250|Homo sapiens outer dense fiber protein
protein.
Length = 250
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 336 ICDLYY*KQCCIKS*EYPLILC--MKHEICTMVDMLSC 443
+CDLY CC YP LC + C + D+ C
Sbjct: 36 LCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYPC 73
>BC104457-1|AAI04458.1| 250|Homo sapiens outer dense fiber of sperm
tails 1 protein.
Length = 250
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 336 ICDLYY*KQCCIKS*EYPLILC--MKHEICTMVDMLSC 443
+CDLY CC YP LC + C + D+ C
Sbjct: 36 LCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYPC 73
>BC104456-1|AAI04457.1| 250|Homo sapiens outer dense fiber of sperm
tails 1 protein.
Length = 250
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 336 ICDLYY*KQCCIKS*EYPLILC--MKHEICTMVDMLSC 443
+CDLY CC YP LC + C + D+ C
Sbjct: 36 LCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYPC 73
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,992,244
Number of Sequences: 237096
Number of extensions: 1082391
Number of successful extensions: 2663
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 2592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2663
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4423060356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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