Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a10
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0366 + 9494205-9494810                                           27   4.1  
10_01_0159 - 1807806-1809386                                           27   5.5  
10_01_0160 - 1812213-1813790                                           26   7.2  

>02_02_0366 + 9494205-9494810
          Length = 201

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 104 VGDPVVIAVSASGAVTITASGTASARIFVL 15
           +GDP  +   A+GAV +T + T   R+ VL
Sbjct: 136 LGDPGFLGDVAAGAVAVTTATTVRGRVAVL 165


>10_01_0159 - 1807806-1809386
          Length = 526

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 74 ASGAVTITASGTASARIFVLKSCG 3
          ASGAV   A+   S  +FV+KS G
Sbjct: 21 ASGAVVSLAANDVSGELFVIKSAG 44


>10_01_0160 - 1812213-1813790
          Length = 525

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 86  IAVSASGAVTITASGTASARIFVLKSCG 3
           I   ASGA    A+  AS  +FV+KS G
Sbjct: 19  IGHGASGATVSLAADDASGELFVVKSAG 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,151,729
Number of Sequences: 37544
Number of extensions: 73451
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)