Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11a06
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 44 2e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 39 6e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.003
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.005
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.006
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.032
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 31 0.17
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 31 0.17
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.30
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.39
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 29 0.52
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.2
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.2
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 2.1
SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|... 27 2.8
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 3.6
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 4.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 4.8
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 6.4
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 6.4
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 25 8.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 8.4
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
I + LT NVT++HI EIF YG + I P+ + N +GY Y+E+ D+A
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELN-KGYCYIEYVYHDQA 153
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/55 (29%), Positives = 35/55 (63%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
R+ + LT + D + +F +G ++ + P+D+ +N +G+AY++F++AD+A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK-KTNNPKGFAYIDFHDADDA 377
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHN---GRGYAYVEFNNADE 718
R+ +GRL+ + + I +F T GTV+ + P R+ G A+V FNN ++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQED 101
Score = 25.8 bits (54), Expect = 6.4
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Frame = +2
Query: 413 EKIRDRSPTGEKKKSVLPLSNDKAKIKEKQXXXXXXXXXXXXXXXXX--TRIHIGRLTLN 586
E + S E + P SN+ + +KQ I++ L++
Sbjct: 156 ESAKGSSDENEANTATAPSSNEANGVDKKQNEIKGKGGSGKNKAKPLPPNSIYVSGLSVT 215
Query: 587 VTRDHIHEIFSTYG------TVKSIE-FPMDRL----HPHNGRGYAYVEFNNADE 718
+T + + E+F Y V+S+ + + R+ GRG+ +V F NA++
Sbjct: 216 LTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFANAED 270
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+++G L +VT + E+F++ G V SI D + GYAYV F+N ++ +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV-TRRSLGYAYVNFHNMEDGE 135
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+ +GRL+ NV + + F YGT+ MD +GY YV+F + AK
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG-QSGRSKGYGYVDFETPEAAK 318
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+G L +VT ++ F +G + S+ + R R YA+VEF+ ++AK
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVA--LHRKEKAVDRSYAFVEFDEPEDAK 60
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.5 bits (73), Expect = 0.032
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +2
Query: 563 HIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNAD 715
H+G L+ ++T + + + F V SI +D L RG+ YVEF AD
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPL-TERSRGFGYVEFETAD 144
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.1 bits (67), Expect = 0.17
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 602 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
I ++FS YG V + FP L + R + YV+ DEA
Sbjct: 682 ITKLFSAYGNVVDVRFP--SLRYNTNRRFCYVQMRKPDEA 719
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVE-FNNAD 715
+++G L+ T + I+ +FS G ++ I +DR G+ +VE F N D
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF-TKTPCGFCFVEYFENQD 85
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.3 bits (65), Expect = 0.30
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
R+ + + N+T + + IF +G ++ + D + +G+ Y+++ N A+
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD--DQNRSKGFGYIQYRNPISAR 394
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG--RGYAYVEFNN 709
+++G + + + + +IF G VKS + +D P +G +GY + E+++
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID---PESGQPKGYGFCEYHD 55
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
+ + + + D + +IFS +GTV + + + RG+ ++ F+ +EA
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV-TKASRGFGFLSFSTVEEA 155
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 11/63 (17%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE-------FPMDRLHPH----NGRGYAYVEFN 706
I++G + ++ + I + FS YG V+SI +P ++ P NG Y +V+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 707 NAD 715
NA+
Sbjct: 79 NAE 81
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+++ L + + IH +FS YG VK I L P N +Y ++A A+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM----LSPDNSAIVSYESLSSAIVAR 52
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNN 709
I+IG L ++ D I +FS +G I D+ +G+A++++ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK-ETGKSKGFAFLKYED 81
>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 405 LIGRRLEIDHQQEKKKNLCYLYQMTKLKLR 494
L+ RRL +H+ E++ NL Y+Y+ +L LR
Sbjct: 15 LLCRRLFAEHEVERQSNL-YIYRNPELPLR 43
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 431 SPTGEKKKSVLPLSNDKAKIKEKQ 502
SP+ + KK L L ND +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 587 VTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAKM 727
V+ ++I I T + I PM + +G+AYV+F D K+
Sbjct: 136 VSEENIKPI--TTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKL 180
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 389 KDRRDADREKIRDRSPTGEKKKSVLPLSNDK 481
K RR A+REK+R G+K K L + K
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQK 509
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +3
Query: 438 QEKKKNLCYLYQ-MTKLKLRKN 500
+E KK++ YL + + KLKLRKN
Sbjct: 46 EESKKSIIYLEERLEKLKLRKN 67
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTV 634
TR+ +GR+ TR+ + + F YG +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 371 PNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLSNDKAKIKEKQ 502
P+ P+K R R + R + GE +SV K +KE++
Sbjct: 103 PDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVKEEE 146
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 724 FCFISIIKLNI-CVSSSIMWVKSVHRKLN*FHSTICRKYFMDVITRYI 584
F F ++ + I C ++ +W K V RKL ++ T + F+ ++ +I
Sbjct: 578 FIFALVVSMAIYCTAAYFVWQKKVERKL--WYLTNSKLSFVPILVSFI 623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,617
Number of Sequences: 5004
Number of extensions: 39834
Number of successful extensions: 147
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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