Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt11a06
(732 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 65 4e-11
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 39 0.003
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 38 0.010
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 37 0.017
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 35 0.068
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 35 0.068
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 35 0.068
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 35 0.068
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 35 0.068
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 35 0.068
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 33 0.16
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 32 0.36
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 32 0.36
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 32 0.36
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 31 0.84
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 0.84
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.84
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 1.1
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 1.1
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 1.1
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 31 1.1
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z49911-12|CAD30448.1| 137|Caenorhabditis elegans Hypothetical p... 29 2.6
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 2.6
Z36948-7|CAD30436.1| 137|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 3.4
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 3.4
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 28 5.9
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 28 5.9
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 28 5.9
AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical ... 28 5.9
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 28 7.8
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 65.3 bits (152), Expect = 4e-11
Identities = 26/56 (46%), Positives = 39/56 (69%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
R+ I L+ NV + H+ EIFS YG +K+++ P DR H H RGY YVE++N ++A+
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAE 189
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
T++ + L + + +F T+G VK+I P RG+ +V+F +ADEA
Sbjct: 748 TKLLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDFISADEA 803
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAKM 727
+++G T +VT + F +G V +I PMD RG+ +VEF+ A++A M
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMD-YESGKHRGFGFVEFDMAEDAAM 67
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 590 TRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
T D +H+ FS YG +K+I +DR +GYA VE+ EA
Sbjct: 67 TEDDVHDKFSEYGKIKNIHLNLDR-RTGFLKGYALVEYETQKEA 109
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 34.7 bits (76), Expect = 0.068
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
T ++I L N D + E+ S YG + S + MD+ +N +GY +V+F + A
Sbjct: 107 TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKA-TNNCKGYGFVDFESPQAA 161
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 34.7 bits (76), Expect = 0.068
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
T ++I L N D + E+ S YG + S + MD+ +N +GY +V+F + A
Sbjct: 81 TNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKA-TNNCKGYGFVDFESPQAA 135
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAKM 727
+I +G ++ V + + F+ YG V + DR + + RG+A+VEF + K+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRS-RGFAFVEFTTGEGCKL 85
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAKM 727
+I +G ++ V + + F+ YG V + DR + + RG+A+VEF + K+
Sbjct: 30 KIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRS-RGFAFVEFTTGEGCKL 85
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
T + + L + I +IF ++G ++ I+ +D RG+A + F NAD+A+
Sbjct: 127 THVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDS--NRENRGFATITFRNADDAQ 181
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
T + + L + I +IF ++G ++ I+ +D RG+A + F NAD+A+
Sbjct: 272 THVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDS--NRENRGFATITFRNADDAQ 326
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
I + L N T IHE F+ T++ ++F P+ G AYVEF N +EA
Sbjct: 66 IRLRGLPFNATEKDIHEFFAGL-TIERVKFVCTTGRPN---GEAYVEFKNTEEA 115
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAKM 727
+++G L+ D ++E+F G V+ + +DR G+ +VE+ ++A++
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRF-KKTPCGFCFVEYYTREDAEL 93
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
++++G L +V + +IF YG +K ++ R G +A+VEF + +A+
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR-----GPAFAFVEFEDHRDAE 60
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
++++G L +V + +IF YG +K ++ R G +A+VEF + +A+
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGR-----GPAFAFVEFEDHRDAE 60
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
T + I L+ T + + F YG + + P D+ + +G+ +V F +A+
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK-YSRQSKGFGFVRFYERRDAE 74
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 31.1 bits (67), Expect = 0.84
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
T + I L+ T + + F YG + + P D+ + +G+ +V F +A+
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDK-YSRQSKGFGFVRFYERRDAE 74
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAKM 727
+ +GR+ + + F YG +K + D RGYA++E+ +D+A+M
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHD--EAGKPRGYAFIEY--SDKAEM 157
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE-FPMDRLHPHNGRGYAYVEFNNADEA 721
T +++G + ++T D I + F+++G + + F M +GYA+V+F+N D A
Sbjct: 128 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAA 175
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE-FPMDRLHPHNGRGYAYVEFNNADEA 721
T +++G + ++T D I + F+++G + + F M +GYA+V+F+N D A
Sbjct: 138 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAA 185
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE-FPMDRLHPHNGRGYAYVEFNNADEA 721
T +++G + ++T D I + F+++G + + F M +GYA+V+F+N D A
Sbjct: 241 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAA 288
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIE-FPMDRLHPHNGRGYAYVEFNNADEA 721
T +++G + ++T D I + F+++G + + F M +GYA+V+F+N D A
Sbjct: 209 TSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFKM--------QGYAFVKFDNKDAA 256
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 399 VMLIGRRLEIDHQQEKKKNLCY--LYQMTKLKLRKNRNDLQDVRSENAHHHHDQLVSTLD 572
V+ R I HQQ+K+ N Y L + + NR +L+D+R+ + + S L+
Sbjct: 201 VLCSEHRSTIPHQQQKRMNAMYSNLMYFGEFQHTSNRRELKDIRAATETEYDTLVASALE 260
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
RI+IGRLT V+ I F YG ++ + G+ +VEF++ +A+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK---------NGFGFVEFDDKRDAE 50
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
RI+IGRLT V+ I F YG ++ + G+ +VEF++ +A+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK---------NGFGFVEFDDKRDAE 50
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
RI+IGRLT V+ I F YG ++ + G+ +VEF++ +A+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK---------NGFGFVEFDDKRDAE 50
>Z49911-12|CAD30448.1| 137|Caenorhabditis elegans Hypothetical
protein D2089.1b protein.
Length = 137
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 646
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 646
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z36948-7|CAD30436.1| 137|Caenorhabditis elegans Hypothetical
protein D2089.1b protein.
Length = 137
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 646
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.6
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE 646
+H+ ++ + TRDHI+ +F+ G ++ ++
Sbjct: 12 LHVANISTSATRDHIYNMFNYLGKIQDLK 40
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+ L + + DH F +YG V + D + ++ + +A V+F N D+A+
Sbjct: 264 VHVPHLDRH-SPDHYRRRFESYGQVIDV----DMVKSNDNKAFAVVQFTNIDDAQ 313
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+ L + + DH F +YG V + D + ++ + +A V+F N D+A+
Sbjct: 279 VHVPHLDRH-SPDHYRRRFESYGQVIDV----DMVKSNDNKAFAVVQFTNIDDAQ 328
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+ L + + DH F +YG V + D + ++ + +A V+F N D+A+
Sbjct: 279 VHVPHLDRH-SPDHYRRRFESYGQVIDV----DMVKSNDNKAFAVVQFTNIDDAQ 328
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+ L + + DH F +YG V + D + ++ + +A V+F N D+A+
Sbjct: 264 VHVPHLDRH-SPDHYRRRFESYGQVIDV----DMVKSNDNKAFAVVQFTNIDDAQ 313
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+ L + + DH F +YG V + D + ++ + +A V+F N D+A+
Sbjct: 279 VHVPHLDRH-SPDHYRRRFESYGQVIDV----DMVKSNDNKAFAVVQFTNIDDAQ 328
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAK 724
+H+ L + + DH F +YG V + D + ++ + +A V+F N D+A+
Sbjct: 279 VHVPHLDRH-SPDHYRRRFESYGQVIDV----DMVKSNDNKAFAVVQFTNIDDAQ 328
>Z82060-3|CAB04883.1| 206|Caenorhabditis elegans Hypothetical
protein T27F6.4 protein.
Length = 206
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 444 KKKNLCYLYQMTKLKLRKN--RNDLQDVRSENAHHHHDQL 557
KKK+ +T LK RK + L V S + HHHH L
Sbjct: 83 KKKDRSEKNVVTNLKYRKPTANHHLDSVHSSSEHHHHHHL 122
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 501 RNDLQDVRSENAHHHHDQLVSTL 569
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 501 RNDLQDVRSENAHHHHDQLVSTL 569
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 501 RNDLQDVRSENAHHHHDQLVSTL 569
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -2
Query: 311 SWMMKMNVMNFLSYWMMTERMTLKNYLMN-----FHYYHCCWSLSHLSFSCFLWVSSSLS 147
SW NV N S++ T+ N L++ + Y C + +S +W+ S
Sbjct: 181 SWFFDPNVGNDPSFYHNIPH-TINNLLVSASSTPLYIYLCYHLIFKFGYSTSMWLYRSKQ 239
Query: 146 QLQAKAIYF*PFSTYYVFIYV 84
Q+ +A+ F +IYV
Sbjct: 240 QIVIQAVILCSFHAVAAYIYV 260
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 501 RNDLQDVRSENAHHHHDQLVSTL 569
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical
protein C29G2.4 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -2
Query: 305 MMKMNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSH-LSFSCFLWVSSSLSQLQAKA 129
M+ N +L+Y + TL L Y+H C+ L +S +W+ S Q+ A+
Sbjct: 189 MIGNNPKIYLNYTTVVNN-TLSTVLTTGMYFHLCYYLIFKFGYSTSMWLYKSKRQIIAQG 247
Query: 128 IY--F*PFSTYYVFIYV 84
I F ST ++ YV
Sbjct: 248 IILTFFHASTSIIYEYV 264
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 557 RIHIGRLTLNV-TRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEA 721
R+ IG + + TRD I E+F +G + ++ + +G+ +V+FN A A
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNY-------FAQQGFGFVQFNEAGSA 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,297
Number of Sequences: 27780
Number of extensions: 220656
Number of successful extensions: 901
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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