Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a04
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   5.5  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    25   9.5  

>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 224 FAARSPSCAAPTVSSWTTSSELIYLDNIYKESIKIINIQNVI 349
           F + SP    PT+S + T+  + Y+ +IY      + +QN+I
Sbjct: 346 FVSNSPWQLWPTLSKFFTNDNMPYISSIYLRHFNGV-LQNII 386


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 272 STSSQSVQHTMGSLPRSPHTGGKDLS 195
           STSS    HT+ S  +S HT G   S
Sbjct: 553 STSSSGSSHTITSTSQSVHTSGSSTS 578


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +2

Query: 296 LDNIYKESIKIINIQNVISFQINCTDTDRLYLEEPLRGNELKPFRRNSIYI 448
           +D+ Y  ++K+   Q +    I+CT        EP+  N+ +   RN+ ++
Sbjct: 62  IDSTYAHTLKLAENQEINLSIIDCTHEIEQLEIEPVTSNDWEIAERNAAWL 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,545
Number of Sequences: 5004
Number of extensions: 47594
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)