Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a04
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0379 + 2975701-2976831                                           28   5.6  
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346...    27   9.9  
08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232     27   9.9  
06_02_0036 - 10844876-10846173,10846490-10847012                       27   9.9  
01_05_0536 - 23011618-23011635,23011871-23012052,23012160-230123...    27   9.9  

>05_01_0379 + 2975701-2976831
          Length = 376

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 238 APCREARTPAGRIYPC 191
           APCR+   PAGR Y C
Sbjct: 147 APCRDTLAPAGRCYVC 162


>08_02_0370 -
           16333471-16333526,16333821-16333912,16334553-16334671,
           16335152-16335226,16335328-16335393,16335507-16335563,
           16335640-16335689,16335774-16335944,16337057-16337183,
           16337658-16338017
          Length = 390

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 271 PRAHSRCSTRWAPCREARTPAGR 203
           PRA  R ++  AP R ARTP GR
Sbjct: 78  PRAGVRVASSIAPRRAARTPGGR 100


>08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232
          Length = 192

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 80  RSTDPSTNAARDILCAHRPAPRL 12
           R  DP     +DIL + RPAPRL
Sbjct: 83  RDIDPVVQLIKDILHSDRPAPRL 105


>06_02_0036 - 10844876-10846173,10846490-10847012
          Length = 606

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 485 VEYAPSGTTWLYKC 444
           V Y  SGTTW YKC
Sbjct: 454 VAYTTSGTTWHYKC 467


>01_05_0536 -
           23011618-23011635,23011871-23012052,23012160-23012396,
           23012480-23012593,23012806-23013025,23013143-23013229
          Length = 285

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 196 DRSFPPVCGLRGKEPIVCCTDCELVDN 276
           ++  PP CG R  +PI C  D  L ++
Sbjct: 52  EKKHPPGCGSRDSQPIACTDDPPLSES 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,034
Number of Sequences: 37544
Number of extensions: 345999
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)