Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a04
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053558-1|AAH53558.1| 1136|Homo sapiens MYO1B protein protein.        31   4.7  
AJ001382-1|CAA04713.1|  422|Homo sapiens myh-1c protein.               31   4.7  
AJ001381-1|CAA04712.1|  435|Homo sapiens myh-1c protein.               31   4.7  

>BC053558-1|AAH53558.1| 1136|Homo sapiens MYO1B protein protein.
          Length = 1136

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 251  APTVSSWTTSSELIYLDNIYKESIKIINIQNVISFQINCTDTDRLYLEEPLRGNEL 418
            +P   +W  S   ++LD+ +KE  +I ++     ++   TD  +L  EE L  +EL
Sbjct: 893  SPIDKNWP-SRPYLFLDSTHKELKRIFHLWRCKKYRDQFTDQQKLIYEEKLEASEL 947


>AJ001382-1|CAA04713.1|  422|Homo sapiens myh-1c protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 251 APTVSSWTTSSELIYLDNIYKESIKIINIQNVISFQINCTDTDRLYLEEPLRGNEL 418
           +P   +W  S   ++LD+ +KE  +I ++     ++   TD  +L  EE L  +EL
Sbjct: 179 SPIDKNWP-SRPYLFLDSTHKELKRIFHLWRCKKYRDQFTDQQKLIYEEKLEASEL 233


>AJ001381-1|CAA04712.1|  435|Homo sapiens myh-1c protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 251 APTVSSWTTSSELIYLDNIYKESIKIINIQNVISFQINCTDTDRLYLEEPLRGNEL 418
           +P   +W  S   ++LD+ +KE  +I ++     ++   TD  +L  EE L  +EL
Sbjct: 192 SPIDKNWP-SRPYLFLDSTHKELKRIFHLWRCKKYRDQFTDQQKLIYEEKLEASEL 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,531,712
Number of Sequences: 237096
Number of extensions: 1930069
Number of successful extensions: 4027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4024
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)