Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt11a04
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   6.7  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    27   8.8  

>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 470  SGTTWLYKCKLNSF*RVSVHCHATVLQ-DIIYLYLYN 363
            +G   L+  K N   RVS+ C AT+ + D+ YLY YN
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLY-YN 996


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 470  SGTTWLYKCKLNSF*RVSVHCHATVLQ-DIIYLYLYN 363
            +G   L+  K N   RVS+ C AT+ + D+ YLY YN
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLY-YN 996


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 470  SGTTWLYKCKLNSF*RVSVHCHATVLQ-DIIYLYLYN 363
            +G   L+  K N   RVS+ C AT+ + D+ YLY YN
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLY-YN 996


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 470  SGTTWLYKCKLNSF*RVSVHCHATVLQ-DIIYLYLYN 363
            +G   L+  K N   RVS+ C AT+ + D+ YLY YN
Sbjct: 961  NGMLVLWHYKQNGCNRVSISCQATMSENDVAYLY-YN 996


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +2

Query: 203 PSRRCAGFAARSPSCAAPTVSSWTTSSELIYLDNIYKESIKIINIQNVISFQINCTDTDR 382
           PS+ CA    + P    P V S + S+  I+    +    + +    +   Q+   D D 
Sbjct: 32  PSQDCASLTLQEPPQLLPNVLSLSLSNNSIFRITTFPSEYRRLQSLRLDQCQLEKLDFDA 91

Query: 383 LYLEEPLR 406
           L + E LR
Sbjct: 92  LSVFEQLR 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,687,013
Number of Sequences: 27780
Number of extensions: 294307
Number of successful extensions: 799
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)