Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10p14
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    29   0.025
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.2  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.2  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   2.8  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   3.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = +3

Query: 306  DERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSE 485
            ++ P   K QE        K V++++   +   ++ IK++ ++ +++          + +
Sbjct: 849  EKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVK-IKREAEDRDEDERSFHSNGAKEED 907

Query: 486  DDKPNVSE-ASPSGRAKS---KKKHNSDSDFSPPRRGNPVKRNNSPK 614
            +DKP+VS   SP   A++       NS S  S  R G P   N   K
Sbjct: 908  EDKPSVSPLTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRK 954



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
 Frame = +3

Query: 465 KMYSDSEDDKPNVSEAS--PSGR---------AKSKKKHNSDSDFSPPRR 581
           K  +DS+ D  N+S+    PSG            S+K+ N DS   PP R
Sbjct: 214 KSDADSDSDVVNLSKPGTPPSGEPGNGPLDLSVSSRKRSNDDSVSQPPNR 263


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 501 HLAYHLRNH 475
           HL YHLRNH
Sbjct: 245 HLEYHLRNH 253


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 501 HLAYHLRNH 475
           HL YHLRNH
Sbjct: 3   HLEYHLRNH 11


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 309 ERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKM 470
           E+P     QE+ TT S    V QDD      Q++ + K V  T  +  L FGK+
Sbjct: 311 EKPSSSSNQEKTTTESAKISVIQDDA-----QMR-LNKHVTTTYPKQPLRFGKI 358


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 17/82 (20%), Positives = 35/82 (42%)
 Frame = +3

Query: 243 EGDELDVYDEGDDAPQVAGIIDERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKK 422
           E  E +  D+  D P++  + ++  E  KK+++    +  +   +D+  N    I     
Sbjct: 231 EKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNA 290

Query: 423 DVKETEKENELVFGKMYSDSED 488
           D    E+  E  +  + +D ED
Sbjct: 291 DDISQEEYGEF-YKSLTNDWED 311


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 301 SSMKDQSILKNRNNSPLVLN 360
           S+  +  IL N+NN+ LVLN
Sbjct: 14  STQPNYLILSNKNNTYLVLN 33


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = +3

Query: 429 KETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSD 557
           +  +KEN++ +       +DD   VS++    + +  K+ ++D
Sbjct: 140 RRLKKENKMTWEPKNKTDDDDDALVSDSDDREKDEEDKRDDTD 182


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,943
Number of Sequences: 336
Number of extensions: 1824
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)