Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10p14
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 32 0.062
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 30 0.33
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.43
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.57
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 0.76
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.76
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 29 0.76
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 3.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 27 3.1
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 3.1
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 27 3.1
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 4.0
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.0
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 5.3
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 26 5.3
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 26 5.3
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 5.3
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 5.3
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 25 7.1
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 25 7.1
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 7.1
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 9.3
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 32.3 bits (70), Expect = 0.062
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +3
Query: 354 SKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAK 533
S +V++ D L + + +++T +E E VF + +D+ + N E
Sbjct: 354 SNLPVVDESDAIIGMLSLFHLATAIEQTPEEEEEVFDQAENDAGIEPSNGFEDQQQQLLG 413
Query: 534 SKKKHNSDSDFSPPRRGNPVKRNNSPKRTT-EYDS 635
+ + + D +PP NP+ N +T EY +
Sbjct: 414 NSNEVVENYDVNPPLPLNPLPSNTQQSESTYEYSA 448
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 327 KKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENE--LVFGKMYSDSEDDKPN 500
KK + F+ K + + + + KKD E E+E FG+ S++++ +
Sbjct: 30 KKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAGFGESASENDELESA 89
Query: 501 VSEASPSGRAKSKKKHNSDS 560
SEA + S+K ++ +S
Sbjct: 90 ESEAENDEESSSQKSNSKES 109
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.43
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 414 IKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSDFSPPRRGNPV 593
+KK VKET + + +KP+ S+ AK K +S +D SP +
Sbjct: 9 VKKSVKETASKKGAI----------EKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEA 58
Query: 594 KRNNSPK 614
KR +SP+
Sbjct: 59 KRASSPE 65
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.57
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 372 NQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEAS-PSGRAKSKKKH 548
++DDG + + E +D E E MY D K +A+SK+K
Sbjct: 189 DEDDGIDLLMDPDENMED-SEDESNGPQADSIMYEDFFGPKTAAGRRELKKKKAESKRKR 247
Query: 549 NSDSDFSPPRRGNPVKRNN 605
S DF + N ++ NN
Sbjct: 248 TSKPDFKNDVQQNVIEENN 266
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 28.7 bits (61), Expect = 0.76
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +3
Query: 396 KLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSDFSPP 575
KL Q+ KK + +E E K Y+ + D+P + S AK+K +D
Sbjct: 459 KLLEQQNKKRLLLVSQEKER---KGYTSASPDRPLSQTITESSVAKTKSTTPKSTDTPTE 515
Query: 576 RRGNPVKRNNSPKRTTE 626
+PVK + TTE
Sbjct: 516 ATTSPVKVSTKNSNTTE 532
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 0.76
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +3
Query: 327 KKQEQFTTSSKW-KIVNQDDGFNSKLQIQEIKKDVKETEKENELVFG--KMYSDSEDDKP 497
+K+ + S KW +++ Q +G K Q +KK ++ EKE + K D+E
Sbjct: 139 EKRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAM 198
Query: 498 NVSEASPSGRAKSKKKHNSDSDFSPPRRGNPVKR 599
+ + K +++ P++ P K+
Sbjct: 199 LMRQQRREENLKKRRESKKSKKGKAPKKKKPSKK 232
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.76
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +3
Query: 426 VKETEKENELVFGKMYSDSEDDKPNVS----EASPSGRAKSKKKHNSDSDFSPPRRGNP 590
+ E K +E V + + E KP + ASP+G ++ H + SD PP P
Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKP 328
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 462 GKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSDFS 569
G + S +KP+ S + S +KSKKK S S S
Sbjct: 361 GPAMAPSASNKPSASSTTKSSNSKSKKKVTSISGTS 396
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +3
Query: 318 EHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQE--IKKDVKETEKENELVFGKMYSDSEDD 491
+H + + F ++ + K + + ++LQ E +KE ENEL ++ + +
Sbjct: 273 QHQAELQDFASNIEQKANSLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQEEKDSL 332
Query: 492 KPNVSEASPSGRAKSKKKHNSDSDFSPPRRGNPVKRNNSPKRTTE 626
V E + + + KH+ + + NNS K+ E
Sbjct: 333 LKKVQEGASLAMQRVQNKHDLEKKRLQSAIQPLQEENNSLKQQIE 377
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/81 (19%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 282 APQVAGIIDERPEHIKKQEQFTTSSKWKIVNQDDGFNSK--LQIQEIKKDVKETEKENEL 455
+P+ + + +H + E+ T++ KI + + ++ L++ K + ++K++E+
Sbjct: 661 SPENIEKLKQNDDHFEVTEEITSTINSKISEKQENNVAETILEVTSSPKSSENSQKQSEI 720
Query: 456 VFGKMYSDSEDDKPNVSEASP 518
K E+D+P+ +SP
Sbjct: 721 T--KKRGRDEEDEPSDLHSSP 739
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 489 DKPNVSEASPSGRAKSKKKHNSDSDFSPPRRGNPV-KRNNSPKRTTEYD 632
D+ E+S S S + +SDS+FS P++ V + P T +D
Sbjct: 311 DQKEGDESSSSDNLDSDEDSSSDSEFSSPKKKKKVGNQGKKPLGTDFFD 359
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 492 KPNVSEASPSGRAKSKKKHNSDSD 563
KP E SP R + KH+ DS+
Sbjct: 152 KPEAKEPSPKSRKTDEDKHDKDSN 175
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 276 DDAPQVAGIIDERPEHIKKQEQ---FTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKE 446
+D P+ ++ RP + QEQ S++++ + D + I KD K+++ +
Sbjct: 602 EDKPRHIPCLEARPSPNRIQEQPNIDVPSTRYENTSSSDAVS-------IHKDEKKSKGK 654
Query: 447 NELVFGKMYSDSEDDKPNVSEASPSGRAKSKKK 545
+ + GK+ S+ DK E P+ KKK
Sbjct: 655 SHKL-GKLMMSSKKDKDKSKEKVPTYGTSDKKK 686
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 372 NQDDGFNSKLQIQEIKKDVKETEKENE-LVFGKMYSDSEDDKPNVSEASPSGRA---KSK 539
N+D NS+LQ Q I+K +KE E L+ S S+ D + A S A +
Sbjct: 136 NKDSDRNSRLQ-QLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELS 194
Query: 540 KKHNSD 557
KK+ SD
Sbjct: 195 KKYTSD 200
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/91 (21%), Positives = 35/91 (38%)
Frame = +3
Query: 291 VAGIIDERPEHIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKM 470
+AG+ E + +K ++WK + Q+ +L + ENE +
Sbjct: 409 LAGLPKENEDEVKSICGDILENRWKSLLQEISSQKQLSTDASQTQDASIANENETEIASL 468
Query: 471 YSDSEDDKPNVSEASPSGRAKSKKKHNSDSD 563
SE KP SP + +K N D++
Sbjct: 469 DEGSE-SKPT---PSPPAEQLTDQKQNEDNE 495
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 324 IKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKKDV 428
+KK++Q SK K N+ D +S L E K+DV
Sbjct: 127 VKKKKQREKKSKRKYGNKIDDQDSSLNNNEAKQDV 161
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 369 VNQDDGFNSKLQIQEIKKDVKETEKE--NELVFGKMYSD 479
VN D +SK Q++E++ ++ EKE + LV K SD
Sbjct: 482 VNNDANEDSKKQVEELRLQLQNLEKEHASTLVTLKQKSD 520
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 519 SGRAKSKKKHNSDSDFSPPRRGNPVKRNNSPKRTT 623
S + S +H + S + P R N +R+ SP+ +T
Sbjct: 2 SSQNTSNSRHPASSASALPNRTNTARRSTSPRTST 36
>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 77
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 414 IKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKHNSDSD 563
I++ V E EKE E+ K+Y+ D + EA + KK N + +
Sbjct: 24 IRRKVSEIEKECEMYAVKIYNVERDIQRYRHEAQLLSKVLEKKGLNKEKE 73
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.1
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +3
Query: 378 DDGFNSKLQIQEIKKDVKETE------KENELVFGKMYSDSEDDKPNVSEASPSGRAKSK 539
+D N+K +++EI+K ETE N L FG + +E +++ PS K
Sbjct: 82 EDMENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLSNE-----INKVGPSASFMLK 136
Query: 540 KKHNS 554
+ H+S
Sbjct: 137 EVHDS 141
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +3
Query: 369 VNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKKH 548
+N D S+ + + + E++ +ED + NVS+ SP G S +
Sbjct: 333 INADSSAGSEGVDEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDN 392
Query: 549 NSDSDFSPPRRGNPVKRNN 605
SD GN VK+ N
Sbjct: 393 VVLSD------GNSVKKMN 405
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 546 HNSDSDFSPPRRGNPVKRNNSPKRTTEYDSDLS 644
H+ D D S RR P + ++ TT Y S ++
Sbjct: 395 HDGDDDESTSRRPKPKNKPSNVTSTTSYTSGMT 427
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 7.1
Identities = 22/83 (26%), Positives = 29/83 (34%)
Frame = +3
Query: 366 IVNQDDGFNSKLQIQEIKKDVKETEKENELVFGKMYSDSEDDKPNVSEASPSGRAKSKKK 545
+ N +D N + Q + KD TE +S K V SPS KS
Sbjct: 421 LANAED--NKTFEHQPLSKD---TEAPKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHF 475
Query: 546 HNSDSDFSPPRRGNPVKRNNSPK 614
+ F P K+ N PK
Sbjct: 476 SVPEFKFEPKTEATTDKKLNVPK 498
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 321 HIKKQEQFTTSSKWKIVNQDDGFNSKLQIQEIKK-DVKETEK 443
HIKKQ++ + + D ++ LQI E++K +E EK
Sbjct: 442 HIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEK 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,813
Number of Sequences: 5004
Number of extensions: 31997
Number of successful extensions: 169
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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