Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10p05
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   3.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   4.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   6.3  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.3  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   8.3  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
 Frame = +3

Query: 306 CISDTSLLI-RIMSMPLQVTFTQSTKLSIPDMSWPFATALSHVRFTQPPTLSGALLPCPA 482
           CI D  L +  ++  P +  F+   K  +  ++WPF   L          L  +      
Sbjct: 96  CIQDPLLQVFPVVEEPERFVFSIDPKSPLIAVNWPFKRKLKTTCILAYVALCSSFASSVF 155

Query: 483 SLKCHTIVSTFEILLT*FANIWNIVLLRY*VAGP 584
           ++    I + F I LT       + LL Y  +GP
Sbjct: 156 AVPAEAITTVFHISLTVSLLTMTVFLLGY-CSGP 188


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 319 VSDIQKIADANKVRPFKGTLK-IHQITWSSKSPNII 215
           +S+++ +A   KV   +G +   HQ  +S K PNII
Sbjct: 794 ISELRNLAQQQKVELSEGKVTPSHQFLFSYKDPNII 829


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 406  GQDISGIDSFVDCVKVTCK-GIDIIRINNDVSD 311
            G++ S  DSF+DC     +   D + +NN+++D
Sbjct: 1358 GEEFSPRDSFIDCTICERRFHYDCVGLNNEIAD 1390


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 345  LTLFVLIMMYLIYKKLPMLTKYAPSKGP*KFTRSHGAQNLLTLF 214
            + L +L + +++Y+ LP   +  PSK P  F RS   + L+  F
Sbjct: 2146 IALVLLAIAFVVYRGLPNFYRQCPSKIP-AFYRSLFRRRLIMWF 2188


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = +3

Query: 108 DSFVSREIYSI*ICPILKCVHLM*GAHNKQLSRLQ*IMLGDFELHV----IW*IFKVP-- 269
           D F+++E YSI    +L+ + L+  +H   L ++  + L   +L +    I  + K+   
Sbjct: 73  DGFLAKEAYSIHFQSVLERIQLIPCSHVDDLEKIVEVRLKHAKLILGIADISKLLKIRGC 132

Query: 270 LKGRTLLASAIFCISDTSLLI 332
           L GR L    + C+ ++ +LI
Sbjct: 133 LNGRYLSRYLMLCLQNSKILI 153


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +3

Query: 291 ASAIFCISDTSLLIRIMSMPLQVTFTQSTKLSIPDMSWPFATALSHVRFTQPPTLSGALL 470
           +S+ F  S T++   I S  +  TF+  + +     S P +T+LS    +   T S A  
Sbjct: 549 SSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAST 608

Query: 471 PCPASLKCHTIVSTFEIL 524
             P+S+   +I S+  IL
Sbjct: 609 SSPSSIS-SSISSSSTIL 625


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 551 VPYVSKLCEQNFKCRNYCVAFQ*GWTWQK 465
           + Y+S L +QN + R+  V F  GW   K
Sbjct: 254 IRYISSLMDQNTQFRDQMVPFLHGWLKSK 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,464
Number of Sequences: 5004
Number of extensions: 67041
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)