Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10o23
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 54 6e-09
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 44 5e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 40 1e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 38 3e-04
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 34 0.004
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.004
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 29 0.14
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 1.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 1.8
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 2.3
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 24 4.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 24 4.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 24 5.3
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 23 9.3
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 53.6 bits (123), Expect = 6e-09
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 118 IKDSDDLXTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDS 261
+ DS + + + + DKLVV+DF ATWCGPCK I PK ++ + SD+
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDA 50
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 44.0 bits (99), Expect = 5e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Frame = +1
Query: 118 IKDSDDLXTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 249
++ D TR++ DK+ V+DF A WCGPCK + P L++++ +
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKLSEQ 63
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 39.5 bits (88), Expect = 1e-04
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +1
Query: 70 VILFLVSIYLPXMSIHIKDSDDLXTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAE 249
VI L ++ + ++ ++L + A K +I+F ATWCG CK + P +E+ A
Sbjct: 9 VIFALFALVFASGVVELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGAL 67
Query: 250 MSD 258
D
Sbjct: 68 FED 70
Score = 30.3 bits (65), Expect = 0.062
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 166 KLVVIDFMATWCGPCKMIGPKLDEI 240
K V+++F A WCG CK + P + +
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETL 183
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 37.9 bits (84), Expect = 3e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 166 KLVVIDFMATWCGPCKMIGPKLDEIAAEMSD 258
K V+++F A WCG CK + P +++A E SD
Sbjct: 374 KDVLVEFYAPWCGHCKNLAPTYEKLAEEYSD 404
Score = 36.3 bits (80), Expect = 0.001
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 163 DKLVVIDFMATWCGPCKMIGPKLDEIAAEM 252
DK++++ F A WCG CK + P+ + A E+
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADEL 68
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 34.3 bits (75), Expect = 0.004
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 172 VVIDFMATWCGPCKMIGPKLDEIAAE 249
+ +D A WCGPCK I P ++A++
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASK 47
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 34.3 bits (75), Expect = 0.004
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +1
Query: 106 MSIHIKDSDDLXTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 264
MS+ I + L +++++++F A W PCK + D+ A + +++
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAV 53
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.14
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 160 GDKLVVIDFMATWCGPCKMIGPKLDEIAAEM 252
G LVV F A WCG CK + P ++A+ +
Sbjct: 49 GPSLVV--FYAPWCGYCKKLVPTYQKLASNL 77
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 1.8
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 124 DSDDLXTRLAEAGDKLVVIDFMATWCGPCKMIGPKLDEIAAEMSDSI 264
+ D + RL EAG + +A CGPC + + D+IA+ ++I
Sbjct: 431 ERDGITERLEEAGATV-----LANACGPCIGMWKRTDDIASGEPNAI 472
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 27 LYVVTCVFLIC-ILNCDIIFSFNL 95
+Y+ C+F + +L+C IIF F L
Sbjct: 67 IYLAVCLFFLASVLSCAIIFRFYL 90
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 2.3
Identities = 7/25 (28%), Positives = 13/25 (52%)
Frame = -2
Query: 168 LVACFRQPCXQVVGIFDVNGHLGQI 94
L++CF PC ++G H+ +
Sbjct: 523 LISCFEAPCSYIIGTLSYFFHMDDV 547
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 24.2 bits (50), Expect = 4.0
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +1
Query: 199 CGPCKMIGPKLDEIAAEMSDSI 264
CG CK +GP D + + + +
Sbjct: 54 CGACKRLGPMWDNMVEKAKEQV 75
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 18 PNRLYVVTCVFLICILNCDIIF 83
P R + C+ L+C+LN D+ F
Sbjct: 536 PIREKGLECLSLVCLLNADLAF 557
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 23.8 bits (49), Expect = 5.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 77 NITV*NANKKHASDNVQSIWRQ 12
NIT N K++ +D +S+WR+
Sbjct: 454 NITSINERKENLTDKRKSLWRE 475
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 23.0 bits (47), Expect = 9.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 3 VXSLAPNRLYVVTCVFLICILNCDIIFSFNLSAXD 107
V S P Y+ + IC+ NC F F +++ +
Sbjct: 53 VNSANPTVSYLALHLLDICVKNCGYPFHFQIASEE 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,050,091
Number of Sequences: 5004
Number of extensions: 16593
Number of successful extensions: 54
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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