Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o23
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   1.0  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   4.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   7.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   9.6  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 228 FRPDHLARSAPGRHEVDHDELVAC 157
           F+P  L   A G HE  ++ ++ C
Sbjct: 37  FQPSFLGMEACGIHETTYNSIMKC 60


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -3

Query: 194 VAMKSITTSL---SPASASLVFRSSESLM 117
           +A+  +T +L   SP+S +L + ++ESLM
Sbjct: 255 MALSPVTHNLYYNSPSSENLYYVNTESLM 283


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 195 GRHEVDHDELV 163
           G H+VD DEL+
Sbjct: 122 GDHDVDKDELI 132


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 228 FRPDHLARSAPGRHEVDHDELV 163
           F+P  L  S   RH  D ++L+
Sbjct: 634 FKPPTLTESLLNRHNEDMEKLM 655


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 108 VHSHQRFRRPEXKAGGSRRQARRDRLHG 191
           V   + FRR E     +  +A   R+HG
Sbjct: 592 VEEREEFRRQERMRYAAPHKAFTYRMHG 619


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,298
Number of Sequences: 438
Number of extensions: 1109
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)