Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o20
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    27   1.9  
SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    27   3.3  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.7  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    25   7.6  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   10.0 
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    25   10.0 

>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 259 EKMLYLKSYLKAFSSPVQIVRVVKNVQAKILKTQCHQILRPHLN 390
           E+ + ++SY+  F   +Q+++V  + +  ILK+    + RP+ N
Sbjct: 292 EESIDIRSYV--FHKKIQLIKVTISSEMNILKSDFANLYRPYFN 333


>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 393 EPAIQILIPEPSELAGTSEMSECNELPTSHEISECNKLQSSN 518
           EP+    + EP+ +A   +   C   P + +  +   LQSSN
Sbjct: 6   EPSTATKVSEPAPIASEEKPKPCCACPETKQARDACMLQSSN 47


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 180 SKFSTVCSAHFEGKDLYFTDNGLQRVRKNVVPKKLSESILQSS 308
           SK     S H +GK L+ T      ++ N VPK    S+L+ S
Sbjct: 42  SKIGHKKSFHKDGKGLFKTLRNFLSLKTNKVPKNRKFSLLKGS 84


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 79   CFVCNDLFLQFFITQDGIFFC 17
            C +C D+  Q FIT  G  +C
Sbjct: 1092 CIICRDIIKQGFITTCGHLYC 1112


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 157  ETTKNGSLQSLVLYALHILRERICTLQIMAFKG 255
            E  KNG+ Q + L +L I+RE   +L  M  +G
Sbjct: 1355 ELCKNGTNQKISLQSLEIIREVYSSLSTMIKEG 1387


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 258 RKNVVPKKLSESILQSSPDSPGSQE 332
           RKN VP+K S   L S+  +P S E
Sbjct: 188 RKNAVPRKSSSPPLSSTKHAPQSTE 212


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 223 SFPSKCAEHTVLNFEGTHFSSFLLFLIIVVHL-CFIT 116
           SF  KC ++ +  F+ T    +++    ++HL  F+T
Sbjct: 63  SFTEKCEKYNISLFDSTFVFGYIVNCFFIIHLNTFLT 99


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 580 SITESISDSDTEFSSGNSFDSF 515
           S++E I+D D  F+S   FDS+
Sbjct: 472 SLSEEITDKDQAFASMGYFDSY 493


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 517 FELCNLLHSLIS*LVGSSLHSDI 449
           FE  + LH ++S  VGSS+ S+I
Sbjct: 122 FEFASKLHGMMSKFVGSSVASEI 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,640
Number of Sequences: 5004
Number of extensions: 48295
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)