Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10o20
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   3.5  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.5  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 FEGKDLYFTDNGLQRVRKNVVPKKLSESILQSSP 311
           FEGK  + + N  +   K +  + L  ++LQ  P
Sbjct: 2   FEGKFQFVSQNNFEEFAKVLGDQNLVNTVLQPRP 35


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 210 FEGKDLYFTDNGLQRVRKNVVPKKLSESILQSSP 311
           FEGK  + + N  +   K +  + L  ++LQ  P
Sbjct: 4   FEGKFQFVSQNNFEEFAKVLGDQNLVNTVLQPRP 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,910
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)