Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt10o14
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 28 1.5
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 27 2.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 2.6
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.6
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |... 27 3.5
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 4.6
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 26 6.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.0
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 8.0
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 8.0
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 408 STQIEGEPE--LGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSP 536
+ +I+G PE LGC Y++ N +NL V K Y+A + P
Sbjct: 366 AAKIDGVPEYALGCHNYLNLPNIANLLVNPRTGKHGYVAKFYLEP 410
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -2
Query: 637 SDTKVKSASSKFLSNPSKV*TVNNLSKTFRFSIFGLGNAMAMYRDLFFMNPTSRLEKLYV 458
S+ K +A + PSKV VN+LS F N +MYR + NP ++ ++
Sbjct: 364 SERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSI--SNPLHLVDSQHL 421
Query: 457 LTYSKQPSSGSP 422
+++ +P
Sbjct: 422 SPLNRKTHFNNP 433
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 471 RNCMCLHILSNLALVH-LQFVWNDCFLW 391
RN LH S VH L +W++CFL+
Sbjct: 351 RNLKNLHYNSKKEFVHDLMLIWSNCFLY 378
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 402 SH-STQIEGEPELGCLEYVSTYNFSNLDVGFMK---NKSLYIAIAFPSPKILNLNVFDKL 569
SH S +I+ G L ++ +N NLDV + K L + ++F +++ L
Sbjct: 511 SHRSKEIDYYHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGL 570
Query: 570 LTVHTFEGLLKNLEDADFTLVSEDGEKFR 656
+ FEG +KN +FT+ + E FR
Sbjct: 571 KELLLFEGDVKNTYGLNFTINLKAVEGFR 599
>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 190
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +3
Query: 159 PNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSEMEIDKK 338
P + D + D + + E + I L I++ +GS + + + D
Sbjct: 15 PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74
Query: 339 QKIVRLTKSLKEYKFENTR-ENSHSTQIEG 425
Q+++ KSL E FE R E + + ++G
Sbjct: 75 QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 454 TYSKQPSSGSPSICVE*LFSLVFSNLYSFS 365
+YS++P SPS ++ FS V S L FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 318 EMEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMK 497
E I K+++I R T + +YK +HS ++G CLE + ++ + V F
Sbjct: 261 EESIPKEERIPRFTAASWKYKSGAVGILAHSIILQGTNYDTCLELQADGHYVRM-VDFYG 319
Query: 498 NKSLYI 515
LYI
Sbjct: 320 QPRLYI 325
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = -3
Query: 144 DKHFQYRAILHRMFYKNDGPKLYLYFLL*EYQKTTFGLRYLIAPFS 7
DK+ Y + HR+ + + PK+++ L +YQ GL ++++ ++
Sbjct: 842 DKNLDYFKVAHRIHEEVEQPKIFVGGTLKDYQLK--GLEWMLSLYN 885
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 543 LNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMF 707
L L +K++ VH F + + F+ V + EKF K LAA + +++F
Sbjct: 996 LQLYPEEKIVQVHHFHKDIARIHGIPFSFVIKPQEKFIDTKLRLAARTQYPESIF 1050
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 324 EIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVG 488
+ID ++ R K ++ K +N R ++ + E +YV +NF N VG
Sbjct: 292 KIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,287
Number of Sequences: 5004
Number of extensions: 71661
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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